View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_high_24 (Length: 252)
Name: NF0626_high_24
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24933853 - 24934085
Alignment:
| Q |
1 |
ttgcatcaattattaaatttgtttttattttaactttgtacgtgtaggttctattatggaaaaactcgatgaattgattttaaaaaattgattaggagta |
100 |
Q |
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| T |
24933853 |
ttgcatcaataattaaatttgtttttattttgactttgt----gtaggttctattatgaaaaaactcaatgaattgattttaaaaaattgattaggagta |
24933948 |
T |
|
| Q |
101 |
aaattgagttgaataaatagtaatttatgnnnnnnnnnatnnnnnnngaaatcattgatgtaaacattagttgnnnnnnngggaaagctggtcatcaatt |
200 |
Q |
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| T |
24933949 |
aaatttagttgaataaatagtaattgatgttttttt---tataaaaagaaatcattgatgtaaacattagttgaaaaaaagggaaagttggtcatcaatt |
24934045 |
T |
|
| Q |
201 |
atagaagcaaaagttcgaaattctaactttaatggagaat |
240 |
Q |
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| T |
24934046 |
atagaagcaaaagttcgaaattctaactttaatggagaat |
24934085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 53568035 - 53567976
Alignment:
| Q |
70 |
tgaattgattttaaaaaattgattaggagtaaaattgagttgaataaatagtaatttatg |
129 |
Q |
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| T |
53568035 |
tgaattgattttacaaaattgattttgattaaaagtgagttgaatgaaaagtaatttatg |
53567976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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