View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_high_26 (Length: 251)
Name: NF0626_high_26
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_high_26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 39091156 - 39090922
Alignment:
| Q |
30 |
ctatttacatttctcttgtgtgaattatgttggtgtgtatctgaacattgtacaaatgaataaagtctttatatcgatgatggtagtgtgagtcgaccga |
129 |
Q |
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| T |
39091156 |
ctatttacatttctcttgtgtgaattatgttggtgtgtatctgaacattgtacaaatgaataaagtctttatatcgatgatggtagtgtgagtcgaccga |
39091057 |
T |
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| Q |
130 |
tctcaaatcaatgaatgagatcaattaatgcatctaaaaatgtgtagttt------tgt-------tttttgtttgtgttatcaattaatacaatttctt |
216 |
Q |
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| T |
39091056 |
tctcaaatcaatgaatgagatcaattaatgcatctaaaaatgtgtagtttggattatgtagttttgtttttgtttgtgttatcaattaatacaatttctt |
39090957 |
T |
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| Q |
217 |
gtacaataatctttccatctatccatagtgaccac |
251 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39090956 |
gtacaataatctttccatctatccatagtgaccac |
39090922 |
T |
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