View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_high_5 (Length: 482)
Name: NF0626_high_5
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 137 - 468
Target Start/End: Complemental strand, 52002003 - 52001675
Alignment:
| Q |
137 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
236 |
Q |
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| T |
52002003 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaactacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
52001904 |
T |
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| Q |
237 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
336 |
Q |
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| T |
52001903 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
52001804 |
T |
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| Q |
337 |
cacgcattcatagtgtttcagagaataaagaaaaagatgatgatgtggaacatgaaattgatgatgatgattctccaactcctttctctaaagcagtcaa |
436 |
Q |
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| T |
52001803 |
cacgcattcatagtgtttcagagaataaagaaaaagatgatgatgtggaacatgaagttgatga---tgattctccaactcctttctctaaagcagtcaa |
52001707 |
T |
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| Q |
437 |
agctattcaagaacgaattactaaaagcaaca |
468 |
Q |
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| T |
52001706 |
agctattcaagaacgaattactaaaagcaaca |
52001675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 52002077 - 52002002
Alignment:
| Q |
30 |
gatgcctcttcttctaaacgcacaaaactctacaactttgaaaacacttccgatccaaaaggaaagaaaccactca |
105 |
Q |
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| T |
52002077 |
gatgcctcttcttctaaacgcacaaaactctacaactttgaaaacacttctgatccaaaaggaaagaaaccactca |
52002002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 466
Target Start/End: Complemental strand, 52011639 - 52011542
Alignment:
| Q |
372 |
gatgatgatgtggaacatgaaattgatgatgatgat---tctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaa |
466 |
Q |
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| T |
52011639 |
gatgatgatgtggaacatgaagttgatgttgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaa |
52011542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 454
Target Start/End: Original strand, 51987866 - 51987944
Alignment:
| Q |
373 |
atgatgatgtggaacatgaaattgatgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaat |
454 |
Q |
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| T |
51987866 |
atgatgatatggaacatgaaactgatgatggt---tctccaacacctttctctaaagcaattaaagctattcaagaaagaat |
51987944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 52011878 - 52011785
Alignment:
| Q |
151 |
atcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgatgatagcga |
244 |
Q |
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| T |
52011878 |
atcagaggaaggaaataacagaaaatcaaatatcactggatttggatattaatgactatatcattaccaatgaaactgaaactaatgatagcga |
52011785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 11749419 - 11749362
Alignment:
| Q |
398 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaatt |
455 |
Q |
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| T |
11749419 |
tgatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaatt |
11749362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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