View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0626_low_15 (Length: 390)

Name: NF0626_low_15
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0626_low_15
NF0626_low_15
[»] chr2 (18 HSPs)
chr2 (136-294)||(6405652-6405806)
chr2 (102-139)||(42283277-42283314)
chr2 (102-138)||(4738610-4738646)
chr2 (102-138)||(36132971-36133007)
chr2 (102-137)||(5167780-5167815)
chr2 (102-137)||(15283288-15283323)
chr2 (102-137)||(33296109-33296144)
chr2 (102-136)||(6365185-6365219)
chr2 (102-135)||(30856807-30856840)
chr2 (102-135)||(36435681-36435714)
chr2 (102-135)||(41040266-41040299)
chr2 (102-138)||(1889144-1889180)
chr2 (102-146)||(3299143-3299187)
chr2 (102-138)||(8482259-8482295)
chr2 (102-138)||(31296883-31296919)
chr2 (102-138)||(34144589-34144625)
chr2 (102-146)||(37731238-37731282)
chr2 (102-138)||(44189824-44189860)
[»] chr5 (15 HSPs)
chr5 (102-144)||(36572682-36572724)
chr5 (102-138)||(28811426-28811462)
chr5 (102-137)||(23991172-23991207)
chr5 (102-136)||(6865814-6865848)
chr5 (102-136)||(36548418-36548452)
chr5 (102-136)||(36713216-36713250)
chr5 (102-135)||(19127124-19127157)
chr5 (102-135)||(34381012-34381045)
chr5 (102-135)||(39595272-39595305)
chr5 (102-138)||(125089-125125)
chr5 (102-142)||(11768028-11768068)
chr5 (102-138)||(13734387-13734423)
chr5 (102-138)||(33567250-33567286)
chr5 (109-137)||(33743378-33743406)
chr5 (102-138)||(38500940-38500976)
[»] chr3 (27 HSPs)
chr3 (102-140)||(18169152-18169190)
chr3 (102-143)||(1901964-1902005)
chr3 (102-143)||(1911410-1911451)
chr3 (102-139)||(48945843-48945880)
chr3 (102-138)||(5398915-5398951)
chr3 (102-138)||(12792635-12792671)
chr3 (102-138)||(32575430-32575466)
chr3 (102-138)||(35272024-35272060)
chr3 (102-137)||(108429-108464)
chr3 (102-137)||(20215946-20215981)
chr3 (102-136)||(34607958-34607992)
chr3 (104-137)||(3483130-3483163)
chr3 (102-139)||(8254023-8254060)
chr3 (102-135)||(14957836-14957869)
chr3 (102-135)||(20380927-20380960)
chr3 (102-139)||(22813068-22813105)
chr3 (102-139)||(35376589-35376626)
chr3 (103-136)||(41877650-41877683)
chr3 (102-139)||(49196692-49196729)
chr3 (102-135)||(51464310-51464343)
chr3 (102-139)||(53932429-53932466)
chr3 (102-138)||(20714240-20714276)
chr3 (102-138)||(26279881-26279917)
chr3 (102-138)||(27528407-27528443)
chr3 (102-138)||(34456787-34456823)
chr3 (102-138)||(36818953-36818989)
chr3 (102-142)||(46473121-46473161)
[»] scaffold0514 (1 HSPs)
scaffold0514 (102-139)||(1534-1571)
[»] scaffold0011 (1 HSPs)
scaffold0011 (102-139)||(219702-219739)
[»] chr6 (8 HSPs)
chr6 (102-139)||(30796113-30796150)
chr6 (102-149)||(3339537-3339584)
chr6 (102-136)||(2886615-2886649)
chr6 (102-135)||(32457290-32457323)
chr6 (102-138)||(1897694-1897730)
chr6 (102-134)||(6435037-6435069)
chr6 (102-138)||(11785352-11785388)
chr6 (102-138)||(12441535-12441571)
[»] chr1 (18 HSPs)
chr1 (102-135)||(15061845-15061878)
chr1 (102-142)||(25302681-25302721)
chr1 (102-138)||(35846357-35846393)
chr1 (102-137)||(49453489-49453524)
chr1 (102-137)||(50226917-50226952)
chr1 (102-140)||(10384206-10384244)
chr1 (102-136)||(31427995-31428029)
chr1 (102-136)||(49425737-49425771)
chr1 (102-135)||(5309078-5309111)
chr1 (102-135)||(32821635-32821668)
chr1 (102-139)||(40596081-40596118)
chr1 (102-139)||(40612110-40612147)
chr1 (102-135)||(45740582-45740615)
chr1 (102-138)||(9011642-9011678)
chr1 (102-134)||(32966268-32966300)
chr1 (102-138)||(42256457-42256493)
chr1 (102-138)||(48325805-48325841)
chr1 (102-138)||(48872376-48872412)
[»] chr8 (17 HSPs)
chr8 (102-138)||(28927678-28927714)
chr8 (102-138)||(45101393-45101429)
chr8 (102-137)||(22852877-22852912)
chr8 (102-136)||(5502370-5502404)
chr8 (102-135)||(1796496-1796529)
chr8 (102-135)||(12732842-12732875)
chr8 (105-138)||(32725821-32725854)
chr8 (102-138)||(6004941-6004977)
chr8 (102-138)||(7678729-7678765)
chr8 (105-137)||(8841028-8841060)
chr8 (102-138)||(13267124-13267160)
chr8 (102-138)||(13885772-13885808)
chr8 (102-138)||(20288530-20288566)
chr8 (102-138)||(21075159-21075195)
chr8 (102-138)||(30170767-30170803)
chr8 (105-137)||(40842012-40842044)
chr8 (102-138)||(44380652-44380688)
[»] chr7 (14 HSPs)
chr7 (102-138)||(2469700-2469736)
chr7 (102-138)||(37352017-37352053)
chr7 (102-137)||(22330658-22330693)
chr7 (102-137)||(41966330-41966365)
chr7 (102-144)||(28596897-28596939)
chr7 (102-144)||(30864455-30864497)
chr7 (102-139)||(31274567-31274604)
chr7 (102-135)||(31982057-31982090)
chr7 (102-139)||(33845038-33845075)
chr7 (102-138)||(156020-156056)
chr7 (102-138)||(28824500-28824536)
chr7 (105-137)||(38023465-38023497)
chr7 (108-140)||(45209645-45209677)
chr7 (102-138)||(48395245-48395281)
[»] chr4 (18 HSPs)
chr4 (102-137)||(4896538-4896573)
chr4 (102-137)||(46173548-46173583)
chr4 (102-136)||(26440675-26440709)
chr4 (102-136)||(34116578-34116612)
chr4 (102-136)||(41119508-41119542)
chr4 (102-135)||(6370980-6371013)
chr4 (102-135)||(11064127-11064160)
chr4 (102-135)||(11997685-11997718)
chr4 (102-135)||(15596396-15596429)
chr4 (102-135)||(26885291-26885324)
chr4 (105-142)||(31240641-31240678)
chr4 (102-135)||(37547065-37547098)
chr4 (105-138)||(51318700-51318733)
chr4 (105-142)||(54800991-54801028)
chr4 (102-138)||(4511822-4511858)
chr4 (102-138)||(5208365-5208401)
chr4 (102-138)||(25111080-25111116)
chr4 (102-146)||(37514170-37514214)
[»] scaffold0026 (1 HSPs)
scaffold0026 (102-135)||(113625-113658)
[»] scaffold0131 (1 HSPs)
scaffold0131 (102-134)||(15572-15604)
[»] scaffold0057 (1 HSPs)
scaffold0057 (102-138)||(38876-38912)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 136 - 294
Target Start/End: Original strand, 6405652 - 6405806
Alignment:
Q  136 tttatttttacaataactttttaccaattgatgctattcaaaaacttattattaatcaatctttcnnnnnnnnncttattattaaaggtcaactgctagc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||         |||||||||||||||||||| |||||    
T  6405652 tttatttttacaataactttttaccaattgatgctattcaaaaacttattattaatc----tttcaaaaaaacacttattattaaaggtcaactactagc 6405747  T
Q  236 cttgggtcttgggtagtaaagctaaactcaacccaattccttgatacaccctcgggaaa 294  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  6405748 cttgggtcttgggtagtaaagttaaactcaacccaattccttgatacacccccgggaaa 6405806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 42283277 - 42283314
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||||||||| |||||||||||||||||||||    
T  42283277 ttgtcacaaagtggttgtacaaatatcatttctcttta 42283314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 4738610 - 4738646
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4738610 ttgtcacaaagtggttgtacaaatatcatttctcttt 4738646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 36133007 - 36132971
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||||||||||||||    
T  36133007 ttgtcacaaagtggttgtacaaatatcatttctcttt 36132971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 5167780 - 5167815
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  5167780 ttgtcacaaagtggttgtacaaatatcatttctctt 5167815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 15283288 - 15283323
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  15283288 ttgtcacaaagtggttgtacaaatatcatttctctt 15283323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 33296109 - 33296144
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  33296109 ttgtcacaaagtggttgtacaaatatcatttctctt 33296144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 6365219 - 6365185
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  6365219 ttgtcacaaagtggttgtacaaatatcatttctct 6365185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 30856840 - 30856807
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  30856840 ttgtcacaaagtggttgtacaaatatcatttctc 30856807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 36435714 - 36435681
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  36435714 ttgtcacaaagtggttgtacaaatatcatttctc 36435681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 41040299 - 41040266
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  41040299 ttgtcacaaagtggttgtacaaatatcatttctc 41040266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 1889180 - 1889144
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  1889180 ttgtcagaaagtggttgtacaaatatcatttctcttt 1889144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 3299143 - 3299187
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttatttttac 146  Q
    |||||| ||| ||||| ||||||||||||||||||| ||||||||    
T  3299143 ttgtcataaaatggttgtacaaatatcatttctcttaatttttac 3299187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 8482259 - 8482295
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  8482259 ttgtcataaagtggttgtacaaatatcatttctcttt 8482295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 31296883 - 31296919
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  31296883 ttgtcacaaaatggttgtacaaatatcatttctcttt 31296919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 34144589 - 34144625
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  34144589 ttgtcacaaattggttgtacaaatatcatttctcttt 34144625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 37731238 - 37731282
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttatttttac 146  Q
    |||||| ||||||||| | |||||||||||||||||| |||||||    
T  37731238 ttgtcaaaaagtggttgttcaaatatcatttctctttttttttac 37731282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 44189860 - 44189824
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  44189860 ttgtcataaagtggttgtacaaatatcatttctcttt 44189824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 36572724 - 36572682
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttattttt 144  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  36572724 ttgtcacaaaatagttatacaaatatcatttctctttattttt 36572682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 28811462 - 28811426
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||||||||||||||    
T  28811462 ttgtcacaaagtggttgtacaaatatcatttctcttt 28811426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 23991172 - 23991207
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  23991172 ttgtcacaaagtggttgtacaaatatcatttctctt 23991207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 6865814 - 6865848
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  6865814 ttgtcacaaagtggttgtacaaatatcatttctct 6865848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 36548418 - 36548452
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||| ||||||||||||||||||||||||    
T  36548418 ttgtcacaaaatggttatacaaatatcatttctct 36548452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 36713216 - 36713250
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  36713216 ttgtcacaaagtggttgtacaaatatcatttctct 36713250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 19127157 - 19127124
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  19127157 ttgtcacaaagtggttgtacaaatatcatttctc 19127124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 34381045 - 34381012
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  34381045 ttgtcacaaagtggttgtacaaatatcatttctc 34381012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 39595305 - 39595272
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  39595305 ttgtcacaaagtggttgtacaaatatcatttctc 39595272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 125125 - 125089
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  125125 ttgtcacaaagtagttgtacaaatatcatttctcttt 125089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 11768028 - 11768068
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttattt 142  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  11768028 ttgtcacaaagtggatgtacaaatatcatttctcttcattt 11768068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 13734387 - 13734423
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  13734387 ttgtcataaagtggttgtacaaatatcatttctcttt 13734423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 33567250 - 33567286
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| |||||||||||||| |||||    
T  33567250 ttgtcacaaagtggttgtacaaatatcatttgtcttt 33567286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 33743378 - 33743406
Alignment:
Q  109 aaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||||||||||||||||    
T  33743378 aaagtggttatacaaatatcatttctctt 33743406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 38500976 - 38500940
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  38500976 ttgtcacaaaatggttgtacaaatatcatttctcttt 38500940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 18169190 - 18169152
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttat 140  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  18169190 ttgtcacaaagtggttgtacaaatatcatttctctttat 18169152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 1901964 - 1902005
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttatttt 143  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  1901964 ttgtcacaaagtggttgtacaaatatcatttctctttttttt 1902005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 1911410 - 1911451
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttatttt 143  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  1911410 ttgtcacaaagtggttgtacaaatatcatttctctttttttt 1911451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 48945880 - 48945843
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||||||||| |||||||||||||||||||||    
T  48945880 ttgtcacaaagtggttgtacaaatatcatttctcttta 48945843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 5398951 - 5398915
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||||||||||||||    
T  5398951 ttgtcacaaagtggttgtacaaatatcatttctcttt 5398915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 12792671 - 12792635
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||||||||||||||    
T  12792671 ttgtcacaaagtggttgtacaaatatcatttctcttt 12792635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 32575430 - 32575466
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||||||||||||||||||||||||    
T  32575430 ttgtcacaaaatggttatacaaatatcatttctcttt 32575466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 35272060 - 35272024
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||||||||||||||    
T  35272060 ttgtcacaaagtggttgtacaaatatcatttctcttt 35272024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 108464 - 108429
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  108464 ttgtcacaaagtggttgtacaaatatcatttctctt 108429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 20215981 - 20215946
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  20215981 ttgtcacaaagtggttgtacaaatatcatttctctt 20215946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 34607958 - 34607992
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  34607958 ttgtcacaaagtggttgtacaaatatcatttctct 34607992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 3483163 - 3483130
Alignment:
Q  104 gtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||| |||||||||||||||||||    
T  3483163 gtcacaaagtggttgtacaaatatcatttctctt 3483130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 8254060 - 8254023
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  8254060 ttgtcacaaaatggttgtacaaatatcatttctcttta 8254023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 14957869 - 14957836
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  14957869 ttgtcacaaagtggttgtacaaatatcatttctc 14957836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 20380927 - 20380960
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  20380927 ttgtcacaaagtggttgtacaaatatcatttctc 20380960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 22813105 - 22813068
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  22813105 ttgtcagaaagtggttgtacaaatatcatttctcttta 22813068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 35376589 - 35376626
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  35376589 ttgtcacaaaatggttgtacaaatatcatttctcttta 35376626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 41877650 - 41877683
Alignment:
Q  103 tgtcacaaagtggttatacaaatatcatttctct 136  Q
    ||||||||||||||| ||||||||||||||||||    
T  41877650 tgtcacaaagtggttgtacaaatatcatttctct 41877683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 49196729 - 49196692
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  49196729 ttgtcacaaaatggttgtacaaatatcatttctcttta 49196692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 51464310 - 51464343
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  51464310 ttgtcacaaagtggttgtacaaatatcatttctc 51464343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 53932429 - 53932466
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  53932429 ttgtcacaaaatggttgtacaaatatcatttctcttta 53932466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 20714276 - 20714240
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  20714276 ttgtcacaaattggttgtacaaatatcatttctcttt 20714240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 26279917 - 26279881
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  26279917 ttgtcagaaagtggttgtacaaatatcatttctcttt 26279881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 27528443 - 27528407
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| | ||||||||||||||||||    
T  27528443 ttgtcacaaagtggttgttcaaatatcatttctcttt 27528407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 34456823 - 34456787
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  34456823 ttgtcaaaaagtggttattcaaatatcatttctcttt 34456787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 36818989 - 36818953
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  36818989 ttgtcacaaattggttgtacaaatatcatttctcttt 36818953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 46473161 - 46473121
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttattt 142  Q
    ||||| |||||||||| ||||||||||||||||||| ||||    
T  46473161 ttgtcgcaaagtggttgtacaaatatcatttctcttaattt 46473121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 1534 - 1571
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||| |||||||||||||||||||||||||||    
T  1534 ttgtcacaaattggttatacaaatatcatttctcttta 1571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 219702 - 219739
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||||||||| |||||||||||||||||||||    
T  219702 ttgtcacaaagtggttgtacaaatatcatttctcttta 219739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 30796113 - 30796150
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||||||||| |||||||||||||||||||||    
T  30796113 ttgtcacaaagtggttgtacaaatatcatttctcttta 30796150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 3339537 - 3339584
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttatttttacaat 149  Q
    |||||||||| ||||| ||||||||||||||||||||| || ||||||    
T  3339537 ttgtcacaaaatggttgtacaaatatcatttctctttagttatacaat 3339584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 2886649 - 2886615
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||| ||||||||||||||||||||||||    
T  2886649 ttgtcacaaaatggttatacaaatatcatttctct 2886615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 32457290 - 32457323
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  32457290 ttgtcacaaagtggttgtacaaatatcatttctc 32457323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 1897730 - 1897694
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  1897730 ttgtcataaagtggttgtacaaatatcatttctcttt 1897694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 6435069 - 6435037
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttct 134  Q
    |||||||||||||||| ||||||||||||||||    
T  6435069 ttgtcacaaagtggttgtacaaatatcatttct 6435037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 11785388 - 11785352
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  11785388 ttgtcacaaaatggttgtacaaatatcatttctcttt 11785352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 12441571 - 12441535
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  12441571 ttgtcacaaagtagttgtacaaatatcatttctcttt 12441535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 15061878 - 15061845
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    ||||||||||||||||||||||||||||||||||    
T  15061878 ttgtcacaaagtggttatacaaatatcatttctc 15061845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 25302681 - 25302721
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttattt 142  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  25302681 ttgtcacaaagtggttgtacaaatatcatttctcttcattt 25302721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 35846357 - 35846393
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||| ||||||||||||||||||||||    
T  35846357 ttgtcacaaagtggatatacaaatatcatttctcttt 35846393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 49453524 - 49453489
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  49453524 ttgtcacaaagtggttgtacaaatatcatttctctt 49453489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 50226917 - 50226952
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  50226917 ttgtcacaaagtggttgtacaaatatcatttctctt 50226952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 10384244 - 10384206
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttat 140  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  10384244 ttgtcacaaagtagttgtacaaatatcatttctctttat 10384206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 31427995 - 31428029
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  31427995 ttgtcacaaagtggttgtacaaatatcatttctct 31428029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 49425771 - 49425737
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  49425771 ttgtcacaaagtggttgtacaaatatcatttctct 49425737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 5309078 - 5309111
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  5309078 ttgtcacaaagtggttgtacaaatatcatttctc 5309111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 32821668 - 32821635
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  32821668 ttgtcacaaagtggttgtacaaatatcatttctc 32821635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 40596081 - 40596118
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  40596081 ttgtcacaaaatggttgtacaaatatcatttctcttta 40596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 40612147 - 40612110
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  40612147 ttgtcacaaaatggttgtacaaatatcatttctcttta 40612110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 45740582 - 45740615
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  45740582 ttgtcacaaagtggttgtacaaatatcatttctc 45740615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 9011678 - 9011642
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  9011678 ttgtcacaaaatggttgtacaaatatcatttctcttt 9011642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 32966300 - 32966268
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttct 134  Q
    |||||||||||||||| ||||||||||||||||    
T  32966300 ttgtcacaaagtggttgtacaaatatcatttct 32966268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 42256493 - 42256457
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  42256493 ttgtcacaaaatggttgtacaaatatcatttctcttt 42256457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 48325805 - 48325841
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  48325805 ttgtcacaaaatggttgtacaaatatcatttctcttt 48325841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 48872412 - 48872376
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  48872412 ttgtcataaagtggttgtacaaatatcatttctcttt 48872376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 28927714 - 28927678
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||||||||||||||    
T  28927714 ttgtcacaaagtggttgtacaaatatcatttctcttt 28927678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 45101429 - 45101393
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||||||||||||||    
T  45101429 ttgtcacaaagtggttgtacaaatatcatttctcttt 45101393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 22852877 - 22852912
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  22852877 ttgtcacaaagtggttgtacaaatatcatttctctt 22852912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 5502404 - 5502370
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  5502404 ttgtcacaaagtggttgtacaaatatcatttctct 5502370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 1796529 - 1796496
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  1796529 ttgtcacaaagtggttgtacaaatatcatttctc 1796496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 12732875 - 12732842
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  12732875 ttgtcacaaagtggttgtacaaatatcatttctc 12732842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 32725821 - 32725854
Alignment:
Q  105 tcacaaagtggttatacaaatatcatttctcttt 138  Q
    ||||||||||||| ||||||||||||||||||||    
T  32725821 tcacaaagtggttgtacaaatatcatttctcttt 32725854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 6004977 - 6004941
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  6004977 ttgtcacaaagtagttgtacaaatatcatttctcttt 6004941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 7678765 - 7678729
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  7678765 ttgtcaaaaagtggttgtacaaatatcatttctcttt 7678729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 8841060 - 8841028
Alignment:
Q  105 tcacaaagtggttatacaaatatcatttctctt 137  Q
    ||||||||||||| |||||||||||||||||||    
T  8841060 tcacaaagtggttgtacaaatatcatttctctt 8841028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 13267124 - 13267160
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    ||||||||||||||||  |||||||||||||||||||    
T  13267124 ttgtcacaaagtggttgaacaaatatcatttctcttt 13267160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 13885808 - 13885772
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  13885808 ttgtcaaaaattggttatacaaatatcatttctcttt 13885772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 20288566 - 20288530
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  20288566 ttgtcacaaattggttgtacaaatatcatttctcttt 20288530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 21075195 - 21075159
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  21075195 ttgtcacaaattggttgtacaaatatcatttctcttt 21075159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 30170767 - 30170803
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  30170767 ttgtcaaaaagtggttgtacaaatatcatttctcttt 30170803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 40842044 - 40842012
Alignment:
Q  105 tcacaaagtggttatacaaatatcatttctctt 137  Q
    ||||||||||||| |||||||||||||||||||    
T  40842044 tcacaaagtggttgtacaaatatcatttctctt 40842012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 44380652 - 44380688
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  44380652 ttgtcacaaaatggttgtacaaatatcatttctcttt 44380688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 2469736 - 2469700
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||||||||||||||    
T  2469736 ttgtcacaaagtggttgtacaaatatcatttctcttt 2469700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 37352017 - 37352053
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||||||||||||||    
T  37352017 ttgtcacaaagtggttgtacaaatatcatttctcttt 37352053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 22330658 - 22330693
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  22330658 ttgtcacaaagtggttgtacaaatatcatttctctt 22330693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 41966365 - 41966330
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  41966365 ttgtcacaaagtggttgtacaaatatcatttctctt 41966330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 28596939 - 28596897
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttattttt 144  Q
    |||||||||||||||| ||||||||||||||| |||| |||||    
T  28596939 ttgtcacaaagtggttgtacaaatatcatttcacttttttttt 28596897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 30864455 - 30864497
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttattttt 144  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  30864455 ttgtcacaaattggttgtacaaatatcatttctctttaatttt 30864497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 31274567 - 31274604
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  31274567 ttgtcacaaattggttgtacaaatatcatttctcttta 31274604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 31982090 - 31982057
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  31982090 ttgtcacaaagtggttgtacaaatatcatttctc 31982057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 33845075 - 33845038
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttta 139  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  33845075 ttgtcaaaaagtggttattcaaatatcatttctcttta 33845038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 156020 - 156056
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||| | ||||||||||||||||||||    
T  156020 ttgtcacaaagtggatgtacaaatatcatttctcttt 156056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 28824536 - 28824500
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  28824536 ttgtcagaaagtggttgtacaaatatcatttctcttt 28824500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 38023465 - 38023497
Alignment:
Q  105 tcacaaagtggttatacaaatatcatttctctt 137  Q
    ||||||||||||| |||||||||||||||||||    
T  38023465 tcacaaagtggttgtacaaatatcatttctctt 38023497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 45209645 - 45209677
Alignment:
Q  108 caaagtggttatacaaatatcatttctctttat 140  Q
    ||||||||||||||||||||||||||| |||||    
T  45209645 caaagtggttatacaaatatcatttctttttat 45209677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 48395281 - 48395245
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  48395281 ttgtcaaaaagtggttgtacaaatatcatttctcttt 48395245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 4896538 - 4896573
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  4896538 ttgtcacaaagtggttgtacaaatatcatttctctt 4896573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 46173583 - 46173548
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctt 137  Q
    |||||||||||||||| |||||||||||||||||||    
T  46173583 ttgtcacaaagtggttgtacaaatatcatttctctt 46173548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 26440709 - 26440675
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  26440709 ttgtcacaaagtggttgtacaaatatcatttctct 26440675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 34116578 - 34116612
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  34116578 ttgtcacaaagtggttgtacaaatatcatttctct 34116612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 41119508 - 41119542
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctct 136  Q
    |||||||||||||||| ||||||||||||||||||    
T  41119508 ttgtcacaaagtggttgtacaaatatcatttctct 41119542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 6371013 - 6370980
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  6371013 ttgtcacaaagtggttgtacaaatatcatttctc 6370980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 11064127 - 11064160
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  11064127 ttgtcacaaagtggttgtacaaatatcatttctc 11064160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 11997718 - 11997685
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  11997718 ttgtcacaaagtggttgtacaaatatcatttctc 11997685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 15596429 - 15596396
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  15596429 ttgtcacaaagtggttgtacaaatatcatttctc 15596396  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 26885324 - 26885291
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  26885324 ttgtcacaaagtggttgtacaaatatcatttctc 26885291  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 31240678 - 31240641
Alignment:
Q  105 tcacaaagtggttatacaaatatcatttctctttattt 142  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  31240678 tcacaaagtggttgtacaaatatcatttctcattattt 31240641  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 37547098 - 37547065
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  37547098 ttgtcacaaagtggttgtacaaatatcatttctc 37547065  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 51318733 - 51318700
Alignment:
Q  105 tcacaaagtggttatacaaatatcatttctcttt 138  Q
    ||||||||||||| ||||||||||||||||||||    
T  51318733 tcacaaagtggttgtacaaatatcatttctcttt 51318700  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 54801028 - 54800991
Alignment:
Q  105 tcacaaagtggttatacaaatatcatttctctttattt 142  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  54801028 tcacaaagtggttgtacaaatatcatttctcttaattt 54800991  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 4511858 - 4511822
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  4511858 ttgtcataaaatggttatacaaatatcatttctcttt 4511822  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 5208365 - 5208401
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  5208365 ttgtcacaaattggttgtacaaatatcatttctcttt 5208401  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 25111080 - 25111116
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  25111080 ttgtcacaaagtggttgtacaaatattatttctcttt 25111116  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 37514170 - 37514214
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctctttatttttac 146  Q
    |||| ||||| ||| | ||||||||||||||||||||||||||||    
T  37514170 ttgttacaaaatggatgtacaaatatcatttctctttatttttac 37514214  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 113658 - 113625
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctc 135  Q
    |||||||||||||||| |||||||||||||||||    
T  113658 ttgtcacaaagtggttgtacaaatatcatttctc 113625  T

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Target: scaffold0131 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 15572 - 15604
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttct 134  Q
    |||||||||||||||| ||||||||||||||||    
T  15572 ttgtcacaaagtggttgtacaaatatcatttct 15604  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 38912 - 38876
Alignment:
Q  102 ttgtcacaaagtggttatacaaatatcatttctcttt 138  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  38912 ttgtcacaaagtggttgtacaaatattatttctcttt 38876  T

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