View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_low_16 (Length: 387)
Name: NF0626_low_16
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 30 - 366
Target Start/End: Original strand, 39974591 - 39974927
Alignment:
| Q |
30 |
attatttctccgagtatggccaaatatatggcttgtgagaggcctcattcaataaacaaatgagaggaagagcatagataattctagtcataaaactcca |
129 |
Q |
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| T |
39974591 |
attatttctccgagtatggccaaatatatggcttgtgagaggcctcattcaataaacaaatgagaggaagagcatagataattctagtcataaaactcca |
39974690 |
T |
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| Q |
130 |
acatagataaaattatgcagagagaactgtatagcacataaataaatagaaatggaaggtaatgttgattagtagaactccataaagacgagtccctgca |
229 |
Q |
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| T |
39974691 |
acatagataaaattatgcagagagaactgtatagcacataaataaatagaaatggaaggtaatgttgattagtagaactccataaagacgagtccctgca |
39974790 |
T |
|
| Q |
230 |
aatagcctgttttcttcctaagctactgatagaaaatcgtatagaataaggcagtaagattttactgaacaaattgcattagtgcaaaatttcatataat |
329 |
Q |
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| T |
39974791 |
aatagccagttttcttcctaagctactgatagaaaatcgtatagaataaggcagtaagattttactgaacaaattgcattagtgcaaaatttcatataat |
39974890 |
T |
|
| Q |
330 |
ataacatacaagtttgaccaggtcattgattgctctc |
366 |
Q |
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| T |
39974891 |
ataacatacaagtttgaccaggtcattgattgctctc |
39974927 |
T |
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