View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_low_19 (Length: 342)
Name: NF0626_low_19
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_low_19 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 342
Target Start/End: Original strand, 36941422 - 36941750
Alignment:
| Q |
14 |
agaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccc |
113 |
Q |
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| T |
36941422 |
agaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccc |
36941521 |
T |
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| Q |
114 |
aaacccattccacaatgtttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatc |
213 |
Q |
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| T |
36941522 |
aaacccattccacaatgtttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatc |
36941621 |
T |
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| Q |
214 |
ggtttctttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgataaagctgtggattgtccaccttttgcacgatccaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |
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| T |
36941622 |
ggtttctttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgctaaagctgtggtttgtccaccttttgcatgatccaca |
36941721 |
T |
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| Q |
314 |
aacctagctaaaccgaaatctccaagttt |
342 |
Q |
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| T |
36941722 |
aaccttgctaaaccgaaatctccaagttt |
36941750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 36939702 - 36939368
Alignment:
| Q |
14 |
agaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccc |
113 |
Q |
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| T |
36939702 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
36939603 |
T |
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| Q |
114 |
aaacccattccacaatgtttatttcattttcttgagcattaa------ttattggttttcttccacaagctatctctaaagcaacaattccaaaactata |
207 |
Q |
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| T |
36939602 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
36939503 |
T |
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| Q |
208 |
cacatcggtttctttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgataaagctgtggattgtccaccttttgcacga |
307 |
Q |
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||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | |||| ||||||||||| | |
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| T |
36939502 |
cacgtctgtttctttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatgg |
36939403 |
T |
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| Q |
308 |
tccacaaacctagctaaaccgaaatctccaagttt |
342 |
Q |
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| T |
36939402 |
tccacaaaccttgctaaaccgaaatctccaagttt |
36939368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 36949775 - 36949695
Alignment:
| Q |
164 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
244 |
Q |
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| T |
36949775 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36949695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 36959909 - 36959829
Alignment:
| Q |
164 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
244 |
Q |
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| T |
36959909 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36959829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 3054432 - 3054491
Alignment:
| Q |
176 |
gctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcct |
235 |
Q |
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|||| ||| ||||||||||||||||||||||||| || | ||||||||| ||||||||| |
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| T |
3054432 |
gctagctccaaagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
3054491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 28294221 - 28294281
Alignment:
| Q |
178 |
tatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtg |
238 |
Q |
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| T |
28294221 |
tatctccaaagcaactatcccaaaactatacacatctgactctttacttgccctacctgtg |
28294281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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