View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_low_21 (Length: 310)
Name: NF0626_low_21
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42199190 - 42198950
Alignment:
| Q |
1 |
acagtttttcgattcactatggttataatgatataaaaaggttacaacaacttgaaaaacctcactcatttgactcttggttataactatctcacttcca |
100 |
Q |
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| T |
42199190 |
acagtttttcgattcactatggttataatgatataaaaaggttacaacaacttgaaaaacctcactcatttgactcttggttataactatctcacttcca |
42199091 |
T |
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| Q |
101 |
ccacatcattgaattttcagttctttgattcccttaaaaactcaactcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaa |
200 |
Q |
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| T |
42199090 |
ccacatcattgaattttcagttctttgattcccttaaaaactcaactcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaa |
42198991 |
T |
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| Q |
201 |
ttctgttgaatatctgtgaggcaatctacaacagttctgtg |
241 |
Q |
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| T |
42198990 |
ttctgttgaatatctgtgaggcaatctacaacagttctgtg |
42198950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 42211717 - 42211521
Alignment:
| Q |
45 |
caacaacttgaaaaacctcactcatttgactcttggttataactatctcacttccaccacatcattgaattttcagttctttgattcccttaaaaactca |
144 |
Q |
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| T |
42211717 |
caacaacttgaaaaacctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaactca |
42211618 |
T |
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| Q |
145 |
actcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaattctgttgaatatctgtgaggcaatctacaacagttctgtg |
241 |
Q |
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| T |
42211617 |
actcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtg |
42211521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 42223933 - 42223737
Alignment:
| Q |
45 |
caacaacttgaaaaacctcactcatttgactcttggttataactatctcacttccaccacatcattgaattttcagttctttgattcccttaaaaactca |
144 |
Q |
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|||||||||||||||||||||||||||| ||| || | || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42223933 |
caacaacttgaaaaacctcactcatttgtatctcagtaagaataatctcacttccactacatcattgaattttcagttctttgattcccttcgaaactca |
42223834 |
T |
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| Q |
145 |
actcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaattctgttgaatatctgtgaggcaatctacaacagttctgtg |
241 |
Q |
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|||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||| | | |||||||||||||||| |||| |
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| T |
42223833 |
actcagttacaaattcttatggtcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtg |
42223737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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