View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0626_low_3 (Length: 504)

Name: NF0626_low_3
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0626_low_3
NF0626_low_3
[»] chr8 (15 HSPs)
chr8 (14-216)||(895806-896008)
chr8 (391-486)||(896137-896232)
chr8 (278-366)||(896056-896144)
chr8 (138-199)||(5740788-5740848)
chr8 (139-180)||(41955927-41955967)
chr8 (141-246)||(36675336-36675442)
chr8 (136-219)||(324077-324159)
chr8 (137-200)||(37392130-37392192)
chr8 (137-180)||(43066627-43066669)
chr8 (139-180)||(3155841-3155881)
chr8 (140-181)||(9048348-9048388)
chr8 (139-200)||(29107993-29108053)
chr8 (137-169)||(26629153-26629185)
chr8 (136-200)||(41639801-41639864)
chr8 (137-169)||(42716316-42716348)
[»] chr6 (7 HSPs)
chr6 (138-228)||(31517154-31517243)
chr6 (139-217)||(1196056-1196133)
chr6 (139-181)||(8778904-8778945)
chr6 (138-180)||(9188977-9189018)
chr6 (139-181)||(26391317-26391358)
chr6 (139-200)||(2060635-2060695)
chr6 (137-169)||(31883347-31883379)
[»] chr7 (8 HSPs)
chr7 (138-246)||(6822489-6822596)
chr7 (138-246)||(30391156-30391263)
chr7 (166-246)||(5378662-5378744)
chr7 (139-218)||(43213317-43213395)
chr7 (136-228)||(22330605-22330696)
chr7 (139-179)||(23848087-23848126)
chr7 (139-179)||(40949934-40949974)
chr7 (137-169)||(43025805-43025837)
[»] scaffold0054 (1 HSPs)
scaffold0054 (138-228)||(31574-31663)
[»] chr2 (8 HSPs)
chr2 (139-246)||(42081046-42081154)
chr2 (137-200)||(4138187-4138249)
chr2 (137-180)||(18737907-18737949)
chr2 (138-180)||(1052529-1052570)
chr2 (141-199)||(7121390-7121447)
chr2 (140-246)||(22296083-22296190)
chr2 (140-246)||(37966366-37966473)
chr2 (141-181)||(41868401-41868441)
[»] chr4 (5 HSPs)
chr4 (139-228)||(4511823-4511911)
chr4 (137-199)||(46173546-46173607)
chr4 (141-218)||(42169708-42169785)
chr4 (142-246)||(28676108-28676211)
chr4 (140-180)||(34027894-34027934)
[»] chr3 (6 HSPs)
chr3 (167-228)||(7589202-7589263)
chr3 (204-246)||(40419599-40419641)
chr3 (140-230)||(48490485-48490574)
chr3 (139-180)||(37035613-37035654)
chr3 (138-199)||(43169756-43169816)
chr3 (144-200)||(34662020-34662076)
[»] chr5 (5 HSPs)
chr5 (141-228)||(15531935-15532023)
chr5 (138-167)||(33743378-33743407)
chr5 (140-180)||(1293119-1293158)
chr5 (139-199)||(4434480-4434539)
chr5 (139-199)||(14206398-14206457)
[»] chr1 (8 HSPs)
chr1 (139-219)||(45272143-45272222)
chr1 (139-218)||(49453489-49453567)
chr1 (139-200)||(49589976-49590036)
chr1 (139-179)||(14983782-14983821)
chr1 (137-169)||(24806265-24806297)
chr1 (140-180)||(25989017-25989056)
chr1 (138-218)||(27687503-27687582)
chr1 (141-246)||(47059844-47059950)
[»] scaffold0155 (1 HSPs)
scaffold0155 (140-228)||(3245-3332)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 7e-78; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 895806 - 896008
Alignment:
Q  14 tacgttatcttttaatgtttctatggtcatgtttccttgatgccggatcagtacacaaagcattcaatgtacataataataatgtaccaaaagtaaggtg 113  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  895806 tacgttatcttttcatgtttctatggtcatgtttctttgatgccggatcagtacaaaaagcattcaatgtacataataataatgtaccaaaagttaggtg 895905  T
Q  114 tt-gagaatttttagatgataatgataagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctct 212  Q
    || ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||| ||| ||||||||||||||||||||||| ||||    
T  895906 ttagagaatttttagatgataatgataaaagaaatgatatttgtacaaccac-tttttgacaactttctctttggtactcacattataccattattctct 896004  T
Q  213 ctct 216  Q
    ||||    
T  896005 ctct 896008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 391 - 486
Target Start/End: Original strand, 896137 - 896232
Alignment:
Q  391 ccgtggaacttgacgtcgtcgttggccgtcgaaaagtctattgactattcctaaatttttccgcttcctgcaatttttgttgcagtaatgatgatg 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896137 ccgtggaacttgacgtcgtcgttggccgtcgaaaagtctattgactattcctaaatttttccgcttcctgcaatttttgttgcagtaatgatgatg 896232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 278 - 366
Target Start/End: Original strand, 896056 - 896144
Alignment:
Q  278 gttgtcacaaatattcaaatatcactactctaatgataaatgtggggaacggatcttctcaaaacaattgtgtcaatttacctgtggaa 366  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  896056 gttgtctcaaatgttcaaatatcactactataatgataaatgtggggaacggatcttctcaaaacaattgtgtcaatttacccgtggaa 896144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 5740848 - 5740788
Alignment:
Q  138 taagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattat 199  Q
    |||||||||||||||||||| ||||||| |||| |||||||||||| |  ||||||||||||    
T  5740848 taagagaaatgatatttgtacaaccact-ttttgacaactttttctctcatactcacattat 5740788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 41955927 - 41955967
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttt 180  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  41955927 aagagaaatgatatttgtataacca-ttttttaacaactttt 41955967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 36675336 - 36675442
Alignment:
Q  141 gagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttccctt--ctctctatgttgtttt 238  Q
    ||||||||||||||||| ||||| |||||  |||||||||||| |  |||||| |||||   ||||| ||||||||||| ||  |||||| | |||||||    
T  36675336 gagaaatgatatttgtacaacca-tttttgtacaactttttctctcatactcatattatgttattattctctctcttccttttcctctctctattgtttt 36675434  T
Q  239 tgaccaat 246  Q
    ||||||||    
T  36675435 tgaccaat 36675442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 324159 - 324077
Alignment:
Q  136 gataagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcc 219  Q
    ||||||||||||||||| |||| | ||||||||| | ||||||| |||||  |||||||||||||  ||||  |||||||||||    
T  324159 gataagagaaatgatatatgtacatccactttttga-caactttctctgtcatactcacattatattattaatctctctcttcc 324077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 37392192 - 37392130
Alignment:
Q  137 ataagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattata 200  Q
    ||||||||||||||||||||| ||||| |||||| |||||||| ||| |  |||||||||||||    
T  37392192 ataagagaaatgatatttgtacaacca-ttttttgacaactttctctctcatactcacattata 37392130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 43066669 - 43066627
Alignment:
Q  137 ataagagaaatgatatttgtataaccacttttttaacaactttt 180  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||    
T  43066669 ataagagaaatgatatttgtacaaccact-ttttaacaactttt 43066627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 3155841 - 3155881
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttt 180  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  3155841 aagagaaatgatatttgtacaaccac-tttttaacaactttt 3155881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 9048388 - 9048348
Alignment:
Q  140 agagaaatgatatttgtataaccacttttttaacaacttttt 181  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  9048388 agagaaatgatatttgtataacca-ttttctaacaacttttt 9048348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 29107993 - 29108053
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattata 200  Q
    ||||||||||||||||||| || || ||||||||||||||| ||| |  |||||||||||||    
T  29107993 aagagaaatgatatttgtacaatca-ttttttaacaactttctcttttatactcacattata 29108053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 26629185 - 26629153
Alignment:
Q  137 ataagagaaatgatatttgtataaccacttttt 169  Q
    ||||||||||||||||||||| |||||||||||    
T  26629185 ataagagaaatgatatttgtacaaccacttttt 26629153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 41639864 - 41639801
Alignment:
Q  136 gataagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattata 200  Q
    |||||||||||||||||||||| | ||| |||| |||||| ||||||| |  |||||||||||||    
T  41639864 gataagagaaatgatatttgtacatcca-ttttctaacaattttttctctcatactcacattata 41639801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 42716316 - 42716348
Alignment:
Q  137 ataagagaaatgatatttgtataaccacttttt 169  Q
    ||||||||||||||||||||| |||||||||||    
T  42716316 ataagagaaatgatatttgtacaaccacttttt 42716348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 31517243 - 31517154
Alignment:
Q  138 taagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcccttctctct 228  Q
    |||||||||||||||||||| ||||||| |||| |||||||||||| |  ||||||||||||||  |||| ||||||||||| || |||||    
T  31517243 taagagaaatgatatttgtacaaccact-ttttgacaactttttctctcatactcacattatactcttattctctctcttcctttttctct 31517154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 1196056 - 1196133
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctctt 217  Q
    ||||||||||||||||||| || ||| ||||| |||||||| ||| |  ||||||||||||||  |||| |||||||||    
T  1196056 aagagaaatgatatttgtacaatcac-tttttgacaactttctctctaatactcacattatactcttattctctctctt 1196133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 8778945 - 8778904
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaacttttt 181  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  8778945 aagagaaatgatatttgtacaacca-ttttttaacaacttttt 8778904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 9189018 - 9188977
Alignment:
Q  138 taagagaaatgatatttgtataaccacttttttaacaactttt 180  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  9189018 taagagaaatgatatttgtacaacca-ttttttaacaactttt 9188977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 26391358 - 26391317
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaacttttt 181  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  26391358 aagagaaatgatatttgtacaacca-ttttttaacaacttttt 26391317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 2060695 - 2060635
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattata 200  Q
    ||||||||||||||||| ||||||| |||| | |||||||||||| |  |||||||||||||    
T  2060695 aagagaaatgatatttgaataacca-ttttatgacaactttttctctcatactcacattata 2060635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 31883379 - 31883347
Alignment:
Q  137 ataagagaaatgatatttgtataaccacttttt 169  Q
    ||||||||||||||||||||| |||||||||||    
T  31883379 ataagagaaatgatatttgtacaaccacttttt 31883347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 6822596 - 6822489
Alignment:
Q  138 taagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcccttctctctatgttgttt 237  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||| |  ||||||||||||    |||| ||||||||||| || ||||| | || |||    
T  6822596 taagagaaatgatatttgtacaacca-ttttctaacaactttttctctcatactcacattatcttcttattctctctcttcctttttctctctattattt 6822498  T
Q  238 ttgaccaat 246  Q
    |||||||||    
T  6822497 ttgaccaat 6822489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 30391156 - 30391263
Alignment:
Q  138 taagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcccttctctctatgttgttt 237  Q
    |||||||||||||||||||||||| | ||| ||| ||||||||||| |  |||||||||||||   |||| ||||||||||| || ||||| | ||||||    
T  30391156 taagagaaatgatatttgtataactattttatta-caactttttctcttatactcacattatattcttattctctctcttcctttttctctctattgttt 30391254  T
Q  238 ttgaccaat 246  Q
    | |||||||    
T  30391255 tggaccaat 30391263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 5378662 - 5378744
Alignment:
Q  166 tttttaacaactttttctgtggtactcacattataccattatcctctctcttcc--cttctctctatgttgtttttgaccaat 246  Q
    ||||| |||||||| ||| |  |||||||||||||||||||| |||||||||||   ||||||||   |||||||||||||||    
T  5378662 tttttgacaactttctctctcatactcacattataccattattctctctcttcctttttctctctccattgtttttgaccaat 5378744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 43213317 - 43213395
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttc 218  Q
    ||||||||||||||||||| |||||| ||| |||||| ||| ||| |  ||||||||||||||  |||| ||||||||||    
T  43213317 aagagaaatgatatttgtacaaccac-tttctaacaattttctctctcatactcacattatactcttattctctctcttc 43213395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 22330696 - 22330605
Alignment:
Q  136 gataagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcccttctctct 228  Q
    |||||||||||||||||||||| |||||| ||| | |||||||| ||| |  |||||||||||| |  |||| || |||||||| || |||||    
T  22330696 gataagagaaatgatatttgtacaaccac-tttgtgacaactttctctctcatactcacattattctcttattctttctcttcctttttctct 22330605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 23848087 - 23848126
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaacttt 179  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  23848087 aagagaaatgatatttgtataatca-ttttttaacaacttt 23848126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 40949974 - 40949934
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaacttt 179  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  40949974 aagagaaatgatatttgtataactatttttttgacaacttt 40949934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 43025805 - 43025837
Alignment:
Q  137 ataagagaaatgatatttgtataaccacttttt 169  Q
    ||||||||||||||||||||| |||||||||||    
T  43025805 ataagagaaatgatatttgtacaaccacttttt 43025837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 31663 - 31574
Alignment:
Q  138 taagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcccttctctct 228  Q
    |||||||||||||||||||| ||||| |||||| |||||||| ||| |  ||||||||||||||  |||| ||||||||||| || |||||    
T  31663 taagagaaatgatatttgtacaacca-ttttttgacaactttctctctcatactcacattatactcttattctctctcttcctttttctct 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 42081046 - 42081154
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcc--cttctctctatgttgtt 236  Q
    ||||||||||||||||||| | |||| ||||| |||||||| ||| |  ||||||||||| ||| |||| |||||||||||   |||||||| | |||||    
T  42081046 aagagaaatgatatttgtacagccac-tttttgacaactttctctctcatactcacattacacctttattctctctcttcctttttctctctctattgtt 42081144  T
Q  237 tttgaccaat 246  Q
    ||||||||||    
T  42081145 tttgaccaat 42081154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 4138249 - 4138187
Alignment:
Q  137 ataagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattata 200  Q
    ||||||||||||||||||||||||| | |||| |||||||||| ||| |  |||||||||||||    
T  4138249 ataagagaaatgatatttgtataacta-ttttctaacaactttctctctcatactcacattata 4138187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 18737949 - 18737907
Alignment:
Q  137 ataagagaaatgatatttgtataaccacttttttaacaactttt 180  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  18737949 ataagagaaatgatatttgtatatcca-ttttttaacaactttt 18737907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 1052570 - 1052529
Alignment:
Q  138 taagagaaatgatatttgtataaccacttttttaacaactttt 180  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  1052570 taagagaaatgatatttgtacaacca-ttttttaacaactttt 1052529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 7121390 - 7121447
Alignment:
Q  141 gagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattat 199  Q
    ||||||||||||||||||||||| |||| |||||||||| ||| |  ||||||||||||    
T  7121390 gagaaatgatatttgtataacca-ttttgtaacaactttctctctcatactcacattat 7121447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 22296190 - 22296083
Alignment:
Q  140 agagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcc--cttctctctatgttgttt 237  Q
    |||||||||||||||||| ||||| |||||  |||| ||| ||| || ||||||||||||    |||| |||||||||||   |||||||||| ||| ||    
T  22296190 agagaaatgatatttgtacaacca-tttttgtacaattttctctctgatactcacattatcttcttattctctctcttcctttttctctctatattgatt 22296092  T
Q  238 ttgaccaat 246  Q
    |||||||||    
T  22296091 ttgaccaat 22296083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 246
Target Start/End: Original strand, 37966366 - 37966473
Alignment:
Q  140 agagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttccc--ttctctctatgttgttt 237  Q
    |||||||||||||||||| ||||| ||| | | ||||||||||| |  ||||||||| ||    |||||||||||||||||  ||||||||   ||||||    
T  37966366 agagaaatgatatttgtacaaccaatttgtga-caactttttctctcatactcacatgatggtcttatcctctctcttcccttttctctctccattgttt 37966464  T
Q  238 ttgaccaat 246  Q
    |||||||||    
T  37966465 ttgaccaat 37966473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 41868441 - 41868401
Alignment:
Q  141 gagaaatgatatttgtataaccacttttttaacaacttttt 181  Q
    ||||||||||||||||| || || |||||||||||||||||    
T  41868441 gagaaatgatatttgtacaatcatttttttaacaacttttt 41868401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 4511823 - 4511911
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcccttctctct 228  Q
    ||||||||||||||||||||||||| |||| | |||||||| ||| |  |||||||||||||   |||| ||||||||||| ||||||||    
T  4511823 aagagaaatgatatttgtataacca-ttttatgacaactttctctctcatactcacattatattcttattctctctcttcctttctctct 4511911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 46173546 - 46173607
Alignment:
Q  137 ataagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattat 199  Q
    ||||||||||||||||||||| |||||| ||| | |||||||| ||| | |||||||||||||    
T  46173546 ataagagaaatgatatttgtacaaccac-tttgtgacaactttctctctcgtactcacattat 46173607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 42169785 - 42169708
Alignment:
Q  141 gagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttc 218  Q
    ||||||||||| ||||| |||||||||| |||||| ||| ||| |  |||||||||||| |  |||| ||||||||||    
T  42169785 gagaaatgatagttgtacaaccacttttataacaattttatctctcatactcacattatcctcttattctctctcttc 42169708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 28676211 - 28676108
Alignment:
Q  142 agaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcccttctctctatgttgtttttga 241  Q
    |||||||||||||||| ||||| |||| | |||||||| ||| |  |||||||||||||   |||  ||||||||||| || |||||   ||||||||||    
T  28676211 agaaatgatatttgtacaacca-ttttgtgacaactttctctttcatactcacattatattcttactctctctcttcctttttctctccattgtttttga 28676113  T
Q  242 ccaat 246  Q
    |||||    
T  28676112 ccaat 28676108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 34027894 - 34027934
Alignment:
Q  140 agagaaatgatatttgtataaccacttttttaacaactttt 180  Q
    |||||||||||||||||| ||| | ||||||||||||||||    
T  34027894 agagaaatgatatttgtacaacaatttttttaacaactttt 34027934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 7589263 - 7589202
Alignment:
Q  167 ttttaacaactttttctgtggtactcacattataccattatcctctctcttcccttctctct 228  Q
    ||||||||||||||| | |  ||||||||||||||| |||||||||||||||| ||||||||    
T  7589263 ttttaacaactttttatctcatactcacattatacccttatcctctctcttcctttctctct 7589202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 40419641 - 40419599
Alignment:
Q  204 ttatcctctctcttcccttctctctatgttgtttttgaccaat 246  Q
    |||||||||||||||| |||||||| | |||||||||||||||    
T  40419641 ttatcctctctcttcctttctctctctattgtttttgaccaat 40419599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 48490574 - 48490485
Alignment:
Q  140 agagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcccttctctctat 230  Q
    |||||||||||||||||| |||||||||| | |||||||| ||| |  ||||||||||||    |||| ||||||||||| || |||||||    
T  48490574 agagaaatgatatttgtacaaccacttttgt-acaactttctctctcatactcacattatctttttattctctctcttcctttttctctat 48490485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 37035613 - 37035654
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttt 180  Q
    |||| |||||||||||||||||||| |||||| |||||||||    
T  37035613 aagataaatgatatttgtataaccatttttttgacaactttt 37035654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 43169816 - 43169756
Alignment:
Q  138 taagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattat 199  Q
    |||||||||||||||||||| ||||| |||| | |||||||||||| |  ||||||||||||    
T  43169816 taagagaaatgatatttgtacaacca-ttttgtgacaactttttctctcatactcacattat 43169756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 34662020 - 34662076
Alignment:
Q  144 aaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattata 200  Q
    |||||||||||||||||||  ||||||| ||||||| ||| |  |||||||||||||    
T  34662020 aaatgatatttgtataacccattttttagcaactttatctctcatactcacattata 34662076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 15532023 - 15531935
Alignment:
Q  141 gagaaatgatatttgtataaccacttttt-taacaactttttctgtggtactcacattataccattatcctctctcttcccttctctct 228  Q
    ||||||||||||||||||||||||||||| | | || ||| |||||  |||||||||||| |  |||| |||||||||||  |||||||    
T  15532023 gagaaatgatatttgtataaccactttttgtgataattttctctgtcatactcacattatcctcttattctctctcttcctctctctct 15531935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 33743407 - 33743378
Alignment:
Q  138 taagagaaatgatatttgtataaccacttt 167  Q
    ||||||||||||||||||||||||||||||    
T  33743407 taagagaaatgatatttgtataaccacttt 33743378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 1293158 - 1293119
Alignment:
Q  140 agagaaatgatatttgtataaccacttttttaacaactttt 180  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  1293158 agagaaatgatatttgtacaacca-ttttttaacaactttt 1293119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 4434480 - 4434539
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattat 199  Q
    ||||||||||||||||||| ||||| |||||| |||| ||||||| |  ||||||||||||    
T  4434480 aagagaaatgatatttgtacaacca-ttttttgacaattttttctctcatactcacattat 4434539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 14206398 - 14206457
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattat 199  Q
    ||||||||||||||||||| ||||| |||||| |||||||| ||| |  ||||||||||||    
T  14206398 aagagaaatgatatttgtacaacca-ttttttgacaactttctctctcatactcacattat 14206457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 45272222 - 45272143
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcc 219  Q
    ||||||||||||||||||| ||||||| |||| |||||||| ||| |  |||||||||||| |  |||| |||||||||||    
T  45272222 aagagaaatgatatttgtacaaccact-ttttgacaactttctctctcatactcacattatccttttattctctctcttcc 45272143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 49453489 - 49453567
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttc 218  Q
    ||||||||||||||||||| |||||| ||| | |||||||| ||| |  ||||||||||||||  |||| ||||||||||    
T  49453489 aagagaaatgatatttgtacaaccac-tttgtgacaactttctctctcatactcacattatacttttattctctctcttc 49453567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 49590036 - 49589976
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattata 200  Q
    ||||||||||||||||||| ||||||||| || |||||||||| | |  |||||||||||||    
T  49590036 aagagaaatgatatttgtacaaccactttatt-acaactttttatctcatactcacattata 49589976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 14983782 - 14983821
Alignment:
Q  139 aagagaaatgatatttgtataaccacttttttaacaacttt 179  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  14983782 aagagaaatgatatttgtacaaccac-tttttaacaacttt 14983821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 24806297 - 24806265
Alignment:
Q  137 ataagagaaatgatatttgtataaccacttttt 169  Q
    ||||||||||||||||||| |||||||||||||    
T  24806297 ataagagaaatgatatttgaataaccacttttt 24806265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 25989056 - 25989017
Alignment:
Q  140 agagaaatgatatttgtataaccacttttttaacaactttt 180  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  25989056 agagaaatgatatttgtacaacca-ttttttaacaactttt 25989017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 27687582 - 27687503
Alignment:
Q  138 taagagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttc 218  Q
    |||||||||||||||||||| ||||| |||| | |||||||| ||| |  |||||||||||||   |||| ||||||||||    
T  27687582 taagagaaatgatatttgtacaacca-ttttgtgacaactttatctctcatactcacattatatttttattctctctcttc 27687503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 47059950 - 47059844
Alignment:
Q  141 gagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcc--cttctctctatgttgtttt 238  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||    || ||||||||||   |||| |||||||||||   ||||||||   |||||||    
T  47059950 gagaaatgatatttgtacaacca-ttttttaacaactttatctcatatattcacattatattcttattctctctcttcctttttctctctccattgtttt 47059852  T
Q  239 tgaccaat 246  Q
    ||||||||    
T  47059851 tgaccaat 47059844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 3332 - 3245
Alignment:
Q  140 agagaaatgatatttgtataaccacttttttaacaactttttctgtggtactcacattataccattatcctctctcttcccttctctct 228  Q
    |||||||||||||||||| |||||| ||| | |||||||| ||| |  ||||||||| ||||  |||| ||||||||||| || |||||    
T  3332 agagaaatgatatttgtacaaccac-tttctcacaactttctctctcatactcacatcatacttttattctctctcttcctttttctct 3245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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