View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_low_31 (Length: 276)
Name: NF0626_low_31
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_low_31 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 34313044 - 34312817
Alignment:
| Q |
1 |
taatttgtgacagttatttttcctattcaaaacttctatatatacataattaataagtaaccataaataacaaccataaattaaaagtcttcgacacatg |
100 |
Q |
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| T |
34313044 |
taatttgtgacccttatttttcctattcaaaacttctatatatagataattaataagtaaccgtaaataacaaccataaattaaaagtcttcgacatatg |
34312945 |
T |
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| Q |
101 |
tcttaatatgctcttacgtgtcttcaacctttgatcttatctcttcataggcaatttgaatttattctgtcgaaactgaatgaatttgaaatctctatta |
200 |
Q |
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| T |
34312944 |
tcttaatatgctctcacgtgtcttcaacctttgatcttaccttttcatagacaatttgaatttattctatcgaaactgaatgattttgaaatctctatta |
34312845 |
T |
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| Q |
201 |
tgccaaatgcttaacacaatccgtcaaa |
228 |
Q |
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| T |
34312844 |
tgccaaatgcttaacacaatccgtcaaa |
34312817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 30703104 - 30703178
Alignment:
| Q |
116 |
acgtgtcttcaacctttgatcttatctcttcataggcaatttgaatttattctgtcgaaactgaatgaatttgaa |
190 |
Q |
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| T |
30703104 |
acgtgccttcaacctttgaccttgtctctttacagacaatttgaatttattctgtcgaagctgaatgattttgaa |
30703178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 74087 - 74206
Alignment:
| Q |
65 |
aaataacaaccataaattaaaagtcttcgacacatgtcttaatatgctcttacgtgtcttcaacc-tttgatcttatctcttcataggcaatttgaattt |
163 |
Q |
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| T |
74087 |
aaataacagtcacaaactaaaagtcttcgacacatatcttgatatgcttcgacgtgtcttcgacctttttatcttgcctcttcgtaagcaatttgaatgt |
74186 |
T |
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| Q |
164 |
attctgtcgaaactgaatga |
183 |
Q |
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| T |
74187 |
cttttgtcgaagctaaatga |
74206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 23739540 - 23739634
Alignment:
| Q |
89 |
cttcgacacatgtcttaatatgctcttacgtgtcttcaaccttt-gatcttatctcttcataggcaatttgaatttattctgtcgaaactgaatga |
183 |
Q |
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|||||||||||||||| |||||||| | | |||||||||||| |||||| ||| ||||| ||||||||||||| |||||||||| || ||||| |
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| T |
23739540 |
cttcgacacatgtcttgatatgctcccatttatcttcaaccttttgatcttc-ctcctcataagcaatttgaatttcttctgtcgaagctaaatga |
23739634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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