View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_low_39 (Length: 265)
Name: NF0626_low_39
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_low_39 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 47 - 265
Target Start/End: Original strand, 52001769 - 52001987
Alignment:
| Q |
47 |
tttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactgacttctaataaatgactcgttc |
146 |
Q |
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| T |
52001769 |
tttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactgacttctaataaatgactcgttc |
52001868 |
T |
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| Q |
147 |
ctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaaggtatttgatttt |
246 |
Q |
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| T |
52001869 |
ctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaaggtagttgatttt |
52001968 |
T |
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| Q |
247 |
ctggtatttccttcctctg |
265 |
Q |
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| T |
52001969 |
ctggtatttccttcctctg |
52001987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 52011785 - 52011876
Alignment:
| Q |
174 |
tcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaaggtatttgattttctggtatttccttcctctg |
265 |
Q |
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|||||||||| |||||||||||| || |||| |||| |||| ||||| ||| ||| | |||||||||||||| ||||||||||||||| |
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| T |
52011785 |
tcgctatcattagtttcagtttcattggtaatgatatagtcattaatatccaaatccagtgatatttgattttctgttatttccttcctctg |
52011876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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