View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_low_4 (Length: 493)
Name: NF0626_low_4
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 4977280 - 4976849
Alignment:
| Q |
16 |
atgaagaagaaaaattaatggtggaagtatata--gattgaaaaagtacattataaaaatcatgattatcagtttcaatagannnnnnnctagtatgaat |
113 |
Q |
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| T |
4977280 |
atgaagaagaaaaattaatggtggaagtatatatagattgaaaaagtatattataaaaatcatgattatcagtttcaatagatttttttctagtatgaat |
4977181 |
T |
|
| Q |
114 |
tgaagtgttcaaagacacataactaagagatttttaatgtgatgaaattgaattttgaactattatgatagcaaaaggagaaagtgaataaaatatatgt |
213 |
Q |
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| T |
4977180 |
taaagtattcaaagacacataactaagagatttttaatgtgatgaaattgaattttgaactattatgatagcaaaag-agaaagtgaataaaatctatgt |
4977082 |
T |
|
| Q |
214 |
cctcttagggagtttgagaagtgttggagaagaagaagcaataatgtcggttcaatattacatcatcaatctattttggagtgacatgagagtgtacata |
313 |
Q |
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| T |
4977081 |
cctcttaggaagtttgagaagtgttggagaagaagaagcaataatgtcggttcaatattacatcatcaatctattttggagtgacatgagagtgtacata |
4976982 |
T |
|
| Q |
314 |
gtcagaattgtgtgtaaaattaaagatggtttatgttttaggggacacggtgcacatgcaaacataaacagtgagaaaacgtgatacaagagaagggtac |
413 |
Q |
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| T |
4976981 |
gtcagaattgtgtgtaaaattaaagatggtttatgtttcaggggacacggtgcacatgcaaacataaacagtgagaaaacgtgacacaagagaagggtac |
4976882 |
T |
|
| Q |
414 |
gtaatggatgatttcatcttacacgcaagattt |
446 |
Q |
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| T |
4976881 |
gtaatggatgatttcatcttacacgcaagattt |
4976849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 4995187 - 4994756
Alignment:
| Q |
16 |
atgaagaagaaaaattaatggtggaagtatata--gattgaaaaagtacattataaaaatcatgattatcagtttcaatagannnnnnnctagtatgaat |
113 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4995187 |
atgaagaagaaaaattaatggtggaagtatatatagattgaaaaagtatattataaaaatcatgattatcagtttcaatagatttttttctagtatgaat |
4995088 |
T |
|
| Q |
114 |
tgaagtgttcaaagacacataactaagagatttttaatgtgatgaaattgaattttgaactattatgatagcaaaaggagaaagtgaataaaatatatgt |
213 |
Q |
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| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
4995087 |
taaagtattcaaagacacataactaagagatttttaatgtgatgaaattgaattttgaactattatgatagcaaaag-agaaagtgaataaaatctatgt |
4994989 |
T |
|
| Q |
214 |
cctcttagggagtttgagaagtgttggagaagaagaagcaataatgtcggttcaatattacatcatcaatctattttggagtgacatgagagtgtacata |
313 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4994988 |
cctcttaggaagtttgagaagtgttggagaagaagaagcaataatgtcggttcaatattacatcatcaatctattttggagtgacatgagagtgtacata |
4994889 |
T |
|
| Q |
314 |
gtcagaattgtgtgtaaaattaaagatggtttatgttttaggggacacggtgcacatgcaaacataaacagtgagaaaacgtgatacaagagaagggtac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4994888 |
gtcagaattgtgtgtaaaattaaagatggtttatgtttcaggggacacggtgcacatgcaaacataaacagtgagaaaacgtgacacaagagaagggtac |
4994789 |
T |
|
| Q |
414 |
gtaatggatgatttcatcttacacgcaagattt |
446 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
4994788 |
gtaatggatgatttcatcttacacgcaagattt |
4994756 |
T |
|
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