View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_low_45 (Length: 251)
Name: NF0626_low_45
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_low_45 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 43900024 - 43900262
Alignment:
| Q |
13 |
aatattaaatcataattccagtcaaatttcgagaagaattgataactaattatcactagtcgcctaataataatcacatttttcaaaatctcatacattt |
112 |
Q |
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| T |
43900024 |
aatattaaatcataattccagtcaaatttcgagaagaattgataactaattatcactagtcgcctaataataatcacatttttcaaaatctcatacattt |
43900123 |
T |
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| Q |
113 |
ttacattggcaaaggttgagagtctaagcttagttttagcttttcatatcaatcaactgaagatcttaaaatccaaacagaaaaaggataatactgtatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43900124 |
ttacattggcaaaggttgagagtctaagcttagttttagcttttcatatcaatcaactgaagatcttaaaatccaaacagaaaaaggataatactgtatt |
43900223 |
T |
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| Q |
213 |
cattttcttaacaccaaattgcatattttttattcactt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
43900224 |
cattttcttaacaccaaattgcatattttttattcactt |
43900262 |
T |
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