View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_low_48 (Length: 215)
Name: NF0626_low_48
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_low_48 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1046781 - 1046567
Alignment:
| Q |
1 |
tcttcgaaatctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1046781 |
tcttcgaaatctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggt |
1046682 |
T |
|
| Q |
101 |
tttcaagagttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||| |
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| T |
1046681 |
tttcaagagttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtatccagtagccccacgaatttcaaccccatc |
1046582 |
T |
|
| Q |
201 |
aaaactacaatgcgc |
215 |
Q |
| |
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||||||||||||||| |
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| T |
1046581 |
aaaactacaatgcgc |
1046567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 1053442 - 1053252
Alignment:
| Q |
15 |
aaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttcca |
114 |
Q |
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||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||| |
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| T |
1053442 |
aaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgattttcaagggttcca |
1053343 |
T |
|
| Q |
115 |
ccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaaac |
205 |
Q |
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| T |
1053342 |
ccatattcatctgttctgtcgtttgctttatctttcatgaattgttcaactaggtagccatgagctccatggatttcaaccccatcaaaac |
1053252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 1058712 - 1058519
Alignment:
| Q |
10 |
tctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagag |
109 |
Q |
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|||||||||||||||| | | |||||| ||| || ||||| ||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||| | |
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| T |
1058712 |
tctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaaggg |
1058613 |
T |
|
| Q |
110 |
ttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaa |
203 |
Q |
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| T |
1058612 |
atccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaa |
1058519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 1065799 - 1065611
Alignment:
| Q |
15 |
aaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttcca |
114 |
Q |
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||||||||||| | |||||||||||||||| || || ||||||||| ||||||||||||||| ||||||| ||||| ||| ||||| || |||| ||| |
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| T |
1065799 |
aaaaggtgataatcttattccaactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagcaaatcgacagcggttctccagagaccca |
1065700 |
T |
|
| Q |
115 |
ccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaa |
203 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||||||| |
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| T |
1065699 |
ccatattcatctgtcctgtcattcactttatctttcatgaattgctcaaggaggtagccatgagctccatggatttcaaccccatcaaa |
1065611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 1033797 - 1033607
Alignment:
| Q |
15 |
aaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttcca |
114 |
Q |
| |
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||||||||||| | | |||||||||||||| || || |||||||| |||||||| ||||||| |||||| ||||| |||||| || ||||| | |||| |
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| T |
1033797 |
aaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaagggatcca |
1033698 |
T |
|
| Q |
115 |
ccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaaac |
205 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| |||||| |||||||||| |
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| T |
1033697 |
ccatattcatctgttctatcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaagttcaacaccatcaaaac |
1033607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 31 - 205
Target Start/End: Original strand, 1640775 - 1640949
Alignment:
| Q |
31 |
attccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattcatctgttc |
130 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||| |||||||||||||||||| | ||| ||||||||||||||| |||||||| |||| ||| |||| |
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| T |
1640775 |
attccaactctttctgcacctatctcattcacaactgcttcaacaatttccaaagcgaatcgacaacggttttcaagggttccaccgtatttatcagttc |
1640874 |
T |
|
| Q |
131 |
tgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaaac |
205 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| || ||||||||| || |||||||||||||||| |
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| T |
1640875 |
ggtcattcactttatctttcataaattgctcaagtaggtaaccgtgagccccatggatctcaactccatcaaaac |
1640949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 1071531 - 1071338
Alignment:
| Q |
10 |
tctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagag |
109 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||||| | || ||||||||| ||||||||||||||| ||||||| |||| ||||||||| ||||| | |
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| T |
1071531 |
tctgcaaaaggtgataatcttattccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagcaaaccgacaacggttctcaaggg |
1071432 |
T |
|
| Q |
110 |
ttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaa |
203 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||| |||||||| |||||||| |
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| T |
1071431 |
atccaccatactcatctgtcctgtcattcactttatctttcatgaattgttcaaggaggtagccatgagctccatggatttcaaccccatcaaa |
1071338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 1044189 - 1043994
Alignment:
| Q |
10 |
tctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagag |
109 |
Q |
| |
|
|||| ||||||||||||| | ||||||||| | || || || |||||||| ||||| |||||||||| ||||||| |||| |||||| || || || | |
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| T |
1044189 |
tctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccaaaggaaatcgacaacgattctcgaggg |
1044090 |
T |
|
| Q |
110 |
ttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaaac |
205 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||| |
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| T |
1044089 |
atccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaac |
1043994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 205
Target Start/End: Original strand, 44171266 - 44171440
Alignment:
| Q |
31 |
attccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattcatctgttc |
130 |
Q |
| |
|
||||||||| |||| || || |||||||| |||||||||||||||| |||||| |||| ||| ||||| || || | ||||||||||||||||||| |
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| T |
44171266 |
attccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatctgttt |
44171365 |
T |
|
| Q |
131 |
tgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaaac |
205 |
Q |
| |
|
|| ||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||| || |||||||||| |
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| T |
44171366 |
tgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaac |
44171440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 205
Target Start/End: Original strand, 44191562 - 44191736
Alignment:
| Q |
31 |
attccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattcatctgttc |
130 |
Q |
| |
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||||||||| |||| || || |||||||| |||||||||||||||| |||||| |||| ||| ||||| || || | ||||||||||||||||||| |
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| T |
44191562 |
attccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatctgttt |
44191661 |
T |
|
| Q |
131 |
tgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaaac |
205 |
Q |
| |
|
|| ||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||| || |||||||||| |
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| T |
44191662 |
tgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaac |
44191736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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