View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_low_5 (Length: 492)
Name: NF0626_low_5
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 173 - 448
Target Start/End: Original strand, 3224945 - 3225220
Alignment:
| Q |
173 |
ttacttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataacatcaacaagaccatcctcacattcagagagtg |
272 |
Q |
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| T |
3224945 |
ttacttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataatatcaacaagaccatcctcacattcagagagtg |
3225044 |
T |
|
| Q |
273 |
aaagatgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaa |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3225045 |
aaagatgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaa |
3225144 |
T |
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| Q |
373 |
accacctggtttagctttaatatcttgaatatgaagtccatgaataataacattattaacaaattgcattgtaatt |
448 |
Q |
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| T |
3225145 |
accacctggtttagctttaatattttgaatatgaagtccatgaatgataacattattaacaaattgcattgtaatt |
3225220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 3224815 - 3224900
Alignment:
| Q |
68 |
cagagacggacccagaaattttaagtaatgtaggccatgtatatacattttgcagaaattaaatatcatataaaatttcatttttt |
153 |
Q |
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| T |
3224815 |
cagagacggacccataaattttaagtaatgtaggccatgtatatacattttgcagaaattaaatatcatataaaatttcatttttt |
3224900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 174 - 378
Target Start/End: Complemental strand, 2045522 - 2045318
Alignment:
| Q |
174 |
tacttacatcattatgttttgtcatgtgacaatttgagattgtgataccagtagaaccttggataacatcaacaagaccatcctcacattcagagagtga |
273 |
Q |
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|||||||||| |||||||| |||||||| ||||||||||| |||| ||||||| ||||| || |||||||||||||||||||| || | ||| | || |
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| T |
2045522 |
tacttacatcgttatgtttggtcatgtggcaatttgagatggtgactgcagtagagccttgaatgacatcaacaagaccatcctcgcaattagataagga |
2045423 |
T |
|
| Q |
274 |
aagatgatcaatccaaatattggaagatccataaatagagatagcatcaccatcacttcttgttctttgtccagtatggtcaaaagaatccctaatcaaa |
373 |
Q |
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|| |||||||||||| || || || || ||| | | ||||||||||||||||||||| ||||||||| ||| ||| || ||||| || ||||||||| |
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| T |
2045422 |
aatatgatcaatccagatgtttgatgaaccaaagacagagatagcatcaccatcactccttgttcttactccgagatgatcgaaagagtctctaatcaaa |
2045323 |
T |
|
| Q |
374 |
ccacc |
378 |
Q |
| |
|
||||| |
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|
| T |
2045322 |
ccacc |
2045318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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