View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0626_low_8 (Length: 474)
Name: NF0626_low_8
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_low_8 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 64 - 474
Target Start/End: Original strand, 36941335 - 36941750
Alignment:
| Q |
64 |
agattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggatcaggaggagcaga-----gaccaacaatca |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |
|
|
| T |
36941335 |
agattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggatcaggatgagcacaccaaagaccaacaatca |
36941434 |
T |
|
| Q |
159 |
tcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagcccccaaacccattccac |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36941435 |
tcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagcccccaaacccattccac |
36941534 |
T |
|
| Q |
259 |
aatgtttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36941535 |
aatgtttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactg |
36941634 |
T |
|
| Q |
359 |
gcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgataaagctgtggattgtccaccttttgcacgatccacaaacctagctaaac |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
36941635 |
gcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgctaaagctgtggtttgtccaccttttgcatgatccacaaaccttgctaaac |
36941734 |
T |
|
| Q |
459 |
cgaaatctccaagttt |
474 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36941735 |
cgaaatctccaagttt |
36941750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 64 - 474
Target Start/End: Complemental strand, 36939789 - 36939368
Alignment:
| Q |
64 |
agattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggatcaggaggagcaga-----gaccaacaatca |
158 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |
|
|
| T |
36939789 |
agattaggaagtggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggatcaggatgagcacaccaaagaccaacaatca |
36939690 |
T |
|
| Q |
159 |
tcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagcccccaaacccattccac |
258 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
36939689 |
tcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagcccccaaacccactccac |
36939590 |
T |
|
| Q |
259 |
aatgtttatttcattttcttgagcattaa------ttattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttct |
352 |
Q |
| |
|
||| | |||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
36939589 |
aatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactatacacgtctgtttct |
36939490 |
T |
|
| Q |
353 |
ttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgataaagctgtggattgtccaccttttgcacgatccacaaacctag |
452 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | |||| ||||||||||| | ||||||||||| | |
|
|
| T |
36939489 |
ttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatggtccacaaaccttg |
36939390 |
T |
|
| Q |
453 |
ctaaaccgaaatctccaagttt |
474 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
36939389 |
ctaaaccgaaatctccaagttt |
36939368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 36949775 - 36949695
Alignment:
| Q |
296 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
376 |
Q |
| |
|
||||| ||||||||||| || |||||||||| ||||||||| || ||||| | |||| |||| ||| ||||| | |||||| |
|
|
| T |
36949775 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36949695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 36959909 - 36959829
Alignment:
| Q |
296 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
376 |
Q |
| |
|
||||| ||||||||||| || |||||||||| ||||||||| || ||||| | |||| |||| ||| ||||| | |||||| |
|
|
| T |
36959909 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36959829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 367
Target Start/End: Original strand, 3054432 - 3054491
Alignment:
| Q |
308 |
gctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcct |
367 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| || | ||||||||| ||||||||| |
|
|
| T |
3054432 |
gctagctccaaagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
3054491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 28294221 - 28294281
Alignment:
| Q |
310 |
tatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtg |
370 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||| | |||||||| ||||| |||||| |
|
|
| T |
28294221 |
tatctccaaagcaactatcccaaaactatacacatctgactctttacttgccctacctgtg |
28294281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2561 times since January 2019
Visitors: 4010