View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0626_low_9 (Length: 442)
Name: NF0626_low_9
Description: NF0626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0626_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 11202508 - 11202649
Alignment:
| Q |
69 |
gggtgagggattcgctatctacgaagatgataaaggagcagcaagaggagagtggtcgcatcagaaaagctattgcttcaaggtttgattttgataaatt |
168 |
Q |
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| T |
11202508 |
gggtgagggattcgctatctacgaagatgataaaggagcagcaagaggagagtggtcgcatcagaaaagctattgcttcaaggtttgattttgataaatt |
11202607 |
T |
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| Q |
169 |
tgatacattattcattaattgcctgtgttatgttatgttgtg |
210 |
Q |
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| T |
11202608 |
tgatacattattcattaattgcctgtgttatgttatgttgtg |
11202649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 310 - 418
Target Start/End: Original strand, 11202749 - 11202857
Alignment:
| Q |
310 |
aattgaataattgaagcaatgggttgtgtttattttgatttcaatgtgactcttttggctaaattgactgatttgggtgtgttatttagggttaaattgg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11202749 |
aattgaataattgaagcaatgggttgtgtttattttgatttcaatgtgactcttttggctaaattgactgatttgggtgtgttatttagggttaaattgg |
11202848 |
T |
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| Q |
410 |
atggtgatg |
418 |
Q |
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| T |
11202849 |
atggtgatg |
11202857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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