View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627-Insertion-2 (Length: 544)
Name: NF0627-Insertion-2
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Original strand, 49907742 - 49908215
Alignment:
| Q |
8 |
gaaataccttcaggtaacacgttttaaatgaagttgtactactcttcataaagaagttaagactgttgattgtttcttggaacttgaggatctgtccagg |
107 |
Q |
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| T |
49907742 |
gaaataccttcaggtaacacgttttaaatgaagttgtactactcttcataaagaagttaagactgttgattgtttcttggaacttgaggatctgtccagg |
49907841 |
T |
|
| Q |
108 |
tccttgttgtcgctgatactataatttgtgttaagttgtgttatgacaatttcttatcccacccttctgaattctcgtgtgccctgcaacatttcgaact |
207 |
Q |
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| T |
49907842 |
tccttgttgtcgctgatactataatttgtgttaagttgtgttatgacaatttcttatcccacccttctgaattctcgtgtgcc-tgcaacatttcggact |
49907940 |
T |
|
| Q |
208 |
attgaatccaaacagtttaaaacaccctccaacactctaaagcatttcggatttcagaatccgaaccaggtgagaaaggtgggaaaagaaactctcgtgt |
307 |
Q |
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| T |
49907941 |
attgaatccaaacagtttaaaacaccatccaacaccctaaaacatttcggatttcagaatccgaaccaggtgagaaaggtgggaaaagaaactctcgtgt |
49908040 |
T |
|
| Q |
308 |
tatttgcatatatgtgcatgccattttttcaccttgaactgttacaagtcatttttgctttaagatattgttcactgtttgaaatgaaaaacatatctga |
407 |
Q |
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| T |
49908041 |
tatttgcatatatgtgcatgccattttttcaccttgaactgttagaagtcatttttgctttaagattttcttcactgtctgaaatgaaaaacatatctga |
49908140 |
T |
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| Q |
408 |
ggccttgatatgattacaattcttattcttatatttttctacttcaagaagaacagatagtggattggttttgat |
482 |
Q |
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| T |
49908141 |
ggccttgatatgattacaattcttattcttatatttttctacttcaagaagaatagatagtggattggttttgat |
49908215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 473 - 542
Target Start/End: Original strand, 49908838 - 49908907
Alignment:
| Q |
473 |
tggttttgatgcaagtgggtattttatgataacatttcaaannnnnnnnncttaggtaccgtttggcccg |
542 |
Q |
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| T |
49908838 |
tggttttgatgcaagtgggtattttatgataacatttcaaagttgtttctcttaggtaccgtttggcccg |
49908907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 50456505 - 50456581
Alignment:
| Q |
226 |
aaaacaccctccaacactctaaagcatttcggatttcagaatccgaaccaggtgagaaaggtgggaaaagaaactct |
302 |
Q |
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| T |
50456505 |
aaaacactctccaacactgtacaacatttccgatttcataatctaaaccaagtgagaatggtggaaaaagaaactct |
50456581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 33818107 - 33818061
Alignment:
| Q |
258 |
atttcagaatccgaaccaggtgagaaaggtgggaaaagaaactctcg |
304 |
Q |
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| T |
33818107 |
atttcataattcgaaccaggtgagaagggtgggaaaagaaaccctcg |
33818061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 11644256 - 11644180
Alignment:
| Q |
226 |
aaaacaccctccaacactctaaagcatttcggatttcagaatccgaaccaggtgagaaaggtgggaaaagaaactctc |
303 |
Q |
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| T |
11644256 |
aaaacaccctc-aacaccctgaaacatttcggatttgataatctgaaccaggtgagaaagttgtaaaaagaaactctc |
11644180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 28033180 - 28033128
Alignment:
| Q |
226 |
aaaacaccctccaacactctaaagcatttcggatttcagaatccgaaccaggt |
278 |
Q |
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| T |
28033180 |
aaaacaccctccaacatcctacaacatttcggatttcataatccgaaccaggt |
28033128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 34601300 - 34601374
Alignment:
| Q |
226 |
aaaacaccctccaacactctaaagcatttcggatttcagaatccgaaccaggtgagaaaggtgggaaaagaaact |
300 |
Q |
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|||||||||||| ||||| || | |||| |||||||| |||||||| |||||| | | |||||||||||||||| |
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| T |
34601300 |
aaaacaccctcctacactatacaatattttggatttcataatccgaaacaggtgtggagggtgggaaaagaaact |
34601374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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