View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0627_high_14 (Length: 287)
Name: NF0627_high_14
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 51 - 261
Target Start/End: Complemental strand, 14004451 - 14004244
Alignment:
| Q |
51 |
cactagtttaaaaagctttacaatatcattaaattacaaccaattaatttaataattttaaaaatagttatgattaaagtcaactattttaaatgatctc |
150 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14004451 |
cactagtttaaaaaactttacaatatcattaaattacaaccaattaatttaataattttaaaaatagttatgattaaagtcaattattttaaatgatctc |
14004352 |
T |
|
| Q |
151 |
acgattatgattgattgacagtgtgtaaaacatatttactctttcaactactctccttctgcaacacccataacttcagccacccctccaccccgtgctc |
250 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14004351 |
acgattatgattgattgacagtgtataaaacatatttactctttca---actctccttctgcaacacccataacttcagccacccctccaccccgtgctc |
14004255 |
T |
|
| Q |
251 |
atgacaccaat |
261 |
Q |
| |
|
||||||||||| |
|
|
| T |
14004254 |
atgacaccaat |
14004244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 16230784 - 16230853
Alignment:
| Q |
105 |
attttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacagtgt |
174 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
16230784 |
attttagaagtagttatgattaaagtcaaacattttaaatgatcagtcgattacgatcgattgacagtgt |
16230853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 33657469 - 33657401
Alignment:
| Q |
107 |
tttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacagtgtg |
175 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |||||| | ||| |||||||||||||| |||||| |
|
|
| T |
33657469 |
tttaaaaatagttatggttaaagtcaaatattttcaatgatttgacggttatgattgattgatagtgtg |
33657401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 10231872 - 10231939
Alignment:
| Q |
105 |
attttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacagt |
172 |
Q |
| |
|
|||||| ||||||||||||| |||||||| | ||| |||||||| | |||| ||||||||||||||| |
|
|
| T |
10231872 |
attttagaaatagttatgataaaagtcaaatgattttaatgatctgatgattgtgattgattgacagt |
10231939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 2377913 - 2377946
Alignment:
| Q |
135 |
tattttaaatgatctcacgattatgattgattga |
168 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
2377913 |
tatttttaatgatctcacgattatgattgattga |
2377946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 33817334 - 33817391
Alignment:
| Q |
114 |
atagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacag |
171 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
33817334 |
atagatatgattaaagtcatgtatttttaatgatctaacgattatgattgattgacag |
33817391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 45112118 - 45112052
Alignment:
| Q |
102 |
ataattttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattga |
168 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| |||||||| |||||| |||||||||| ||||| |
|
|
| T |
45112118 |
ataactttaaaaatagttataattaaagtcaaacattttaaacaatctcatgattatgatttattga |
45112052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 15867618 - 15867675
Alignment:
| Q |
112 |
aaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgac |
169 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||| |
|
|
| T |
15867618 |
aaatagttatgattaaagtcaaacagttttaatgatatgacgattatgattgattgac |
15867675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 15920248 - 15920280
Alignment:
| Q |
142 |
aatgatctcacgattatgattgattgacagtgt |
174 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
15920248 |
aatgatctcacgattatgattgattgacggtgt |
15920280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 46189367 - 46189395
Alignment:
| Q |
105 |
attttaaaaatagttatgattaaagtcaa |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46189367 |
attttaaaaatagttatgattaaagtcaa |
46189395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 18103125 - 18103089
Alignment:
| Q |
105 |
attttaaaaatagttatgattaaagtcaactatttta |
141 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18103125 |
attttaaaaatagttatggttaaagtcaactatttta |
18103089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 35656474 - 35656527
Alignment:
| Q |
117 |
gttatgattaaagtcaactattttaaatgatctcacgattatgattgattgaca |
170 |
Q |
| |
|
||||||||||| ||||| |||||| |||||| | ||||||||||||||| |||| |
|
|
| T |
35656474 |
gttatgattaatgtcaaatatttttaatgatgtgacgattatgattgatcgaca |
35656527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 45677534 - 45677587
Alignment:
| Q |
115 |
tagttatgattaaagtcaactattttaaatgatctcacgattatgattgattga |
168 |
Q |
| |
|
||||||||| ||||||||| |||||| |||||| |||| |||||||||||||| |
|
|
| T |
45677534 |
tagttatgaataaagtcaaatatttttaatgatttcacagttatgattgattga |
45677587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3499 times since January 2019
Visitors: 4036