View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0627_high_22 (Length: 260)

Name: NF0627_high_22
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0627_high_22
NF0627_high_22
[»] chr1 (3 HSPs)
chr1 (39-246)||(36397801-36398009)
chr1 (73-239)||(2943316-2943481)
chr1 (45-94)||(26555336-26555385)
[»] chr7 (2 HSPs)
chr7 (43-227)||(34869768-34869950)
chr7 (39-163)||(7410827-7410951)
[»] chr8 (2 HSPs)
chr8 (48-118)||(1386491-1386561)
chr8 (180-229)||(1386374-1386423)
[»] chr5 (1 HSPs)
chr5 (48-118)||(16125795-16125865)
[»] chr3 (1 HSPs)
chr3 (66-144)||(1762718-1762796)
[»] chr2 (1 HSPs)
chr2 (50-126)||(8387737-8387813)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 36398009 - 36397801
Alignment:
Q  39 cttgagttgcgttctttccaaataacccaaagacaggccaaccaaacaacttgaaa-gcaaccacggatgttctttttgaatgcatgcatatcaaaaaac 137  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||  |||||||||||||||||||||||||| |||||||||     
T  36398009 cttgagttgcgttctttccaaataacccaaagagaggccaaccaaacaacttaaaaagcaagtacggatgttctttttgaatgcatgcacatcaaaaaat 36397910  T
Q  138 tgttgcgagtgacacctaatatccgaagtaacaactgttaagatgcccaatcaacgatgaatgagataccaaatactaccaaagaagtcacactattaat 237  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  36397909 tgttgcgcgtgacacctaatatctgaagtaacaactgttaagatgcccaatcaacgatgaacaagatatcaaatactaccaaagaagtcacactattaat 36397810  T
Q  238 ctctgctgc 246  Q
    || ||||||    
T  36397809 ctttgctgc 36397801  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 73 - 239
Target Start/End: Original strand, 2943316 - 2943481
Alignment:
Q  73 aggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaactgttgcgagtgacacctaatatccgaagtaacaac 172  Q
    |||||||||||||||||||||||||| |  | |||||||||||||||||||||   |||||||||||||||  |||| || ||| |||||||||||||||    
T  2943316 aggccaaccaaacaacttgaaagcaagcgtgaatgttctttttgaatgcatgcgcgtcaaaaaactgttgcacgtga-acataacatccgaagtaacaac 2943414  T
Q  173 tgttaagatgcccaatcaacgatgaatgagataccaaatactaccaaagaagtcacactattaatct 239  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  2943415 tgttaagatacccaatcaacaatgaaggagataccaaatactaccaaagaagtcgcactattaatct 2943481  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 26555336 - 26555385
Alignment:
Q  45 ttgcgttctttccaaataacccaaagacaggccaaccaaacaacttgaaa 94  Q
    |||| ||||||| |||| |||||||||||| |||||||||||||||||||    
T  26555336 ttgctttctttcaaaatgacccaaagacagaccaaccaaacaacttgaaa 26555385  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 34869950 - 34869768
Alignment:
Q  43 agttgcgttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaactgttg 142  Q
    |||||| ||||||| |||| || |||||| || ||||||||| ||||||||||||  | || ||||||||| |||| ||||||    ||||||| ||||     
T  34869950 agttgcattctttctaaatgactcaaagatagaccaaccaaataacttgaaagcaggcgcgaatgttctttctgaaagcatgcgc--caaaaaagtgttt 34869853  T
Q  143 cgagtgacacctaatatccgaagtaacaactgttaagatgcccaatcaacgatgaatgagataccaaatactaccaaagaagtca 227  Q
    || |||||||| |||||||||||||||||  ||| ||||| |||| || |||||||  ||||| |||| ||||||||||||||||    
T  34869852 cgtgtgacacccaatatccgaagtaacaatcgttgagatgtccaaccatcgatgaacaagatatcaaacactaccaaagaagtca 34869768  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 7410951 - 7410827
Alignment:
Q  39 cttgagttgcgttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaact 138  Q
    ||||||||| ||||||||||||| | ||||||||| |||||||||| ||||||||||||| | |  |||||||||||||| ||||||    |||||||||    
T  7410951 cttgagttgggttctttccaaatgatccaaagacatgccaaccaaataacttgaaagcaagctcaaatgttctttttgaaagcatgcgcgacaaaaaact 7410852  T
Q  139 gttgcgagtgacacctaatatccga 163  Q
    |||| | |||||  || ||||||||    
T  7410851 gttgtgtgtgacttctcatatccga 7410827  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 1386561 - 1386491
Alignment:
Q  48 cgttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaa 118  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |  | ||||||||||||||    
T  1386561 cgttcttttcaaatgacccaaagacaggccaaccaaacaacttgaaagcaagcgtgaatgttctttttgaa 1386491  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 1386423 - 1386374
Alignment:
Q  180 atgcccaatcaacgatgaatgagataccaaatactaccaaagaagtcaca 229  Q
    |||||||||||| ||| || ||||| |||||||| |||||||||||||||    
T  1386423 atgcccaatcaatgataaaggagatgccaaatacgaccaaagaagtcaca 1386374  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 16125795 - 16125865
Alignment:
Q  48 cgttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaa 118  Q
    ||||||||| |||| || ||||||||||||||||||||||| | ||||||| |||  |||||||| |||||    
T  16125795 cgttctttcgaaatgacacaaagacaggccaaccaaacaacctaaaagcaagcacaaatgttcttattgaa 16125865  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 1762796 - 1762718
Alignment:
Q  66 caaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaactgttgcg 144  Q
    |||||| ||| |||||||||||||| ||||||| | |  ||||||||||||||||||||||   |||||| ||||||||    
T  1762796 caaagaaaggtcaaccaaacaacttcaaagcaagcgcaaatgttctttttgaatgcatgcacgccaaaaagctgttgcg 1762718  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 8387813 - 8387737
Alignment:
Q  50 ttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgca 126  Q
    |||||||||| | ||||||||||||| |||||| ||||| ||| ||||   ||| |||||||||||||| |||||||    
T  8387813 ttctttccaattgacccaaagacaggacaaccacacaacctgagagcatagacgaatgttctttttgaaagcatgca 8387737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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