View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0627_high_24 (Length: 252)
Name: NF0627_high_24
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_high_24 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 30573662 - 30573424
Alignment:
| Q |
14 |
atatctgaaaaaggtacatataacttgtacagagcccttgatcaggaattatacgttacatgtgactaataattgcaaaacagagtgaattatcaagata |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30573662 |
atatctgaaaaaggtacatataacttgtacagagcccttgatcaggaattatacgttacatgtgactaataattgcaaaacagagtgaattatcaagata |
30573563 |
T |
|
| Q |
114 |
gatttctaaaattgaacaacacaacttctatttagtaattagttttcataacattagatttttctcatactttacaatccgaaccaatgaggcttatatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30573562 |
gatttctaaaattgaacaacacaacttctatttagtaattagttttcataacattagatttttctcatactttacaatccgaaccaatgagacttatatg |
30573463 |
T |
|
| Q |
214 |
ctgcaatctacttggtttctttgcaaggagaaacaaaga |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30573462 |
ctgcaatctacttggtttctttgcaaggagaaacaaaga |
30573424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 34 - 217
Target Start/End: Complemental strand, 30570203 - 30570017
Alignment:
| Q |
34 |
taacttgtacagagcccttgatcaggaattatacgttacatgtgactaataattgcaaaacagagtgaattat-caagatagatttctaaaattgaacaa |
132 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||||||||||| |
|
|
| T |
30570203 |
taacttgtacatcgctctggatcaggaattatacgttacatgtgactaataattgcaaaacaaagtgaattattcatgatcaatttctaaaattgaacaa |
30570104 |
T |
|
| Q |
133 |
cacaacttctat--ttagtaattagttttcataacattagatttttctcatactttacaatccgaaccaatgaggcttatatgctgc |
217 |
Q |
| |
|
||||| ||| | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30570103 |
cacaaaatctctaattagtaattacttttcataacattggatttttctcatactttacaatccgaaccaatgacgcttatatgctgc |
30570017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 30569776 - 30569720
Alignment:
| Q |
171 |
atttttctcatactttacaatccgaaccaatgaggcttatatgctgcaatctacttg |
227 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
30569776 |
atttttctcatgccttacaatccgaaccaatgagacttgtatgctgcaatctacttg |
30569720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3057 times since January 2019
Visitors: 4027