View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_high_26 (Length: 251)
Name: NF0627_high_26
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_high_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 7822107 - 7822348
Alignment:
| Q |
9 |
caacaatatattcttcaatacttcagggatgctccatattaaattattttaaaatttatcagtaacaacaaatatgctaatgtgttcactaagcaaaatt |
108 |
Q |
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| T |
7822107 |
caacaatatattcttcaatccttcatggatgcttcatattaaattattttaaaatttatcagtaacaacaaatatgctaatgtgttcactaagcaaaatt |
7822206 |
T |
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| Q |
109 |
caattaaattgatctttgtgataccgattataactactttatcttatcggtttatttgtctattgcaaaaactactagattgaagagaaatacttaaatt |
208 |
Q |
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| T |
7822207 |
caattaaattgatctttgtgataccgattataactactttatcttatcagtttatttgtctatagcaaaaactactagattgaagataaatacttaaatt |
7822306 |
T |
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| Q |
209 |
gtctagattgaaatggattaataaatttttcaacaaaaattat |
251 |
Q |
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| T |
7822307 |
gtctagattgaaatggattaataaa-ttttcaacaaaaattat |
7822348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 18641664 - 18641868
Alignment:
| Q |
18 |
attcttcaatacttcagggatgctccatattaaattattttaaaatttatcagtaacaacaaatatgctaatgtgttcactaagcaaaattcaattaaat |
117 |
Q |
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| T |
18641664 |
attcttcaatccttcaaggatgctccatattaaattattctaaaatttatcaagaatgacaaatatactaatgggttcactaaactaaattcaattaaat |
18641763 |
T |
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| Q |
118 |
tgatctttgtgataccgattataactactttatcttatcggtttatttgtctattgcaaaaactactagattgaagagaaatacttaaattgtctagatt |
217 |
Q |
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| T |
18641764 |
tgatc-ttgtggtaacgattataactattttatcttatcagattattcatctatagcaaaagctactagattgacgagaaatacttaactggtctaaatt |
18641862 |
T |
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| Q |
218 |
gaaatg |
223 |
Q |
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| T |
18641863 |
gaaatg |
18641868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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