View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0627_high_5 (Length: 427)
Name: NF0627_high_5
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 30 - 420
Target Start/End: Complemental strand, 32628172 - 32627782
Alignment:
| Q |
30 |
caaagaagctcatagttgtaattagaaaaatgtacttgttttcttctaattttatgtgccgattgcatgtatacagcgaaaggtaatatatttgacaaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32628172 |
caaagaagctcatagttgtaattagaaaaatgtacttgttttcttctaattttatgtgccgatttcatgtatacagcgaaaggtaatatatttgacaaaa |
32628073 |
T |
|
| Q |
130 |
cctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32628072 |
cctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgt |
32627973 |
T |
|
| Q |
230 |
tggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32627972 |
tggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatatttgaacgatctaccgggaaa |
32627873 |
T |
|
| Q |
330 |
tgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactacttgaagaaatggggactgaaatgggtccatgcttcatctca |
420 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32627872 |
tgacttcaacaccatatttacgtcccttgacattttcaaagaaaaactacttgatgaaatggggactgaaatgggtccatgcttcttctca |
32627782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 99 - 379
Target Start/End: Complemental strand, 32704331 - 32704047
Alignment:
| Q |
99 |
tatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagac |
198 |
Q |
| |
|
|||| |||||||||| || | ||||||||||| ||||||||| ||||||||||| | ||||||||| || |||||| ||| ||||||| |||||||||| |
|
|
| T |
32704331 |
tatatagcgaaaggtgatttctttgacaaaacttttgagagaagaagccataacaaacatgtacaataaaacactccccataagcttggcaattgcagat |
32704232 |
T |
|
| Q |
199 |
ttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaat |
298 |
Q |
| |
|
|| |||||||||| |||| ||||||||||||||| ||||| ||||| |||||| |||||||||||| |||||||| | ||||||||||||||||| |||| |
|
|
| T |
32704231 |
ttgggttgctcttatggaccaaacactttgttggcgatctcagatactatcaaggttgtggaaaagatttgtcgagagcttaatcataaatctcctgaat |
32704132 |
T |
|
| Q |
299 |
atat----gatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactac |
379 |
Q |
| |
|
|||| | | ||||||||||||||||| || || |||||||||| |||||| |||||| |||| ||||||||||| |||| |
|
|
| T |
32704131 |
atatataaggtctttttgaacgatctaccagggaacgacttcaacaatgtatttaggtccctcgacacgttcaaagaaaatctac |
32704047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 136 - 361
Target Start/End: Complemental strand, 7298225 - 7298000
Alignment:
| Q |
136 |
agagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtga |
235 |
Q |
| |
|
||||||||||||||||| ||| | ||| ||| ||||| | ||||||| | |||||||||| |||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
7298225 |
agagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctggaccaaacactttgtttgtgg |
7298126 |
T |
|
| Q |
236 |
tcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgactt |
335 |
Q |
| |
|
| | ||||||||||| |||||||| |||||||| | | || | || ||| ||||||||| || | ||||||||| || ||| | | ||||||||||| |
|
|
| T |
7298125 |
tatcagatattatcatggttgtggagaagctttgccaacaattgaaccattcatctcccgagtacaagatattttttaatgatgtttctggaaatgactt |
7298026 |
T |
|
| Q |
336 |
caacaccatatttaagtcccttgaca |
361 |
Q |
| |
|
||||| |||||||||||| ||||||| |
|
|
| T |
7298025 |
caacaacatatttaagtcacttgaca |
7298000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 338
Target Start/End: Complemental strand, 32709952 - 32709802
Alignment:
| Q |
188 |
caattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataa |
287 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||| | | ||| ||||||| || |||||||||||||||||| | | |||||| | |
|
|
| T |
32709952 |
caattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga |
32709853 |
T |
|
| Q |
288 |
atctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaa |
338 |
Q |
| |
|
|||||||||||| | | | || ||||||||| | ||||| || |||||||| |
|
|
| T |
32709852 |
atctcccgaatacaaggtcttcttgaacgatttgccgggtaacgacttcaa |
32709802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 7293599 - 7293498
Alignment:
| Q |
288 |
atctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactacttgaagaa |
387 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||| | || ||||||||||||| ||| |||||||| ||||| | || ||| | ||||||||||| ||| |
|
|
| T |
7293599 |
atctcccgaatacaagatcttttttaacgatctttcagggaatgacttcaacaacatttttaagtcacttgatagctttaaacataaactacttgatgaa |
7293500 |
T |
|
| Q |
388 |
at |
389 |
Q |
| |
|
|| |
|
|
| T |
7293499 |
at |
7293498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 99 - 412
Target Start/End: Complemental strand, 5811748 - 5811435
Alignment:
| Q |
99 |
tatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagac |
198 |
Q |
| |
|
||||||||||||||| || | |||||||||| |||||||||| ||||| |||||||| | ||| ||||||||| | | ||||||| ||||||||||| |
|
|
| T |
5811748 |
tatacagcgaaaggtgatttctttgacaaaatctttgagagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcagac |
5811649 |
T |
|
| Q |
199 |
ttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaat |
298 |
Q |
| |
|
|| |||||||||| |||| |||||||||| |||||||||| || |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5811648 |
ttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaat |
5811549 |
T |
|
| Q |
299 |
atatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactacttgaagaaatggggactga |
398 |
Q |
| |
|
||| | |||||||||||||||||||||||||| |||||| | |||||| ||||||||||| |||||||||||||||| | | ||||||| ||||| |
|
|
| T |
5811548 |
ataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactga |
5811449 |
T |
|
| Q |
399 |
aatgggtccatgct |
412 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
5811448 |
aatgggtccttgct |
5811435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 99 - 391
Target Start/End: Complemental strand, 27737067 - 27736775
Alignment:
| Q |
99 |
tatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagac |
198 |
Q |
| |
|
||||||||||||||| || | ||| ||||||||||||||||| ||||| ||||||| | | || ||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
27737067 |
tatacagcgaaaggtgatttctttaacaaaacctttgagagacgaagctataaccaacctatattgcaacacacttcccagaagcttggcaattgcagac |
27736968 |
T |
|
| Q |
199 |
ttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaat |
298 |
Q |
| |
|
|| |||||||||| ||| |||||||| |||||||||| | ||| |||||||||| ||||||||| ||||||| | | | ||||||||||||| |||| |
|
|
| T |
27736967 |
ttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgcatcatcataaatctcctgaat |
27736868 |
T |
|
| Q |
299 |
atatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactacttgaagaaatgg |
391 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||| |||||||| ||||||| ||| ||||||| |
|
|
| T |
27736867 |
ataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactacgtgatgaaatgg |
27736775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 191 - 374
Target Start/End: Original strand, 20115800 - 20115983
Alignment:
| Q |
191 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
290 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||||||||||| ||| |||||||| |||||||||||||||||| | || | |||||| |||| |
|
|
| T |
20115800 |
ttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatc |
20115899 |
T |
|
| Q |
291 |
tcccgaatat-atgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaa |
374 |
Q |
| |
|
||| |||||| ||| | | ||||||||||||| | ||||| ||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
20115900 |
tcctgaatatgatg-tctctttgaacgatctatccggaaacgacttcaacggcatatttaagtcccttgacaccttcaaagaaaa |
20115983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 191 - 377
Target Start/End: Complemental strand, 21943859 - 21943673
Alignment:
| Q |
191 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
290 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||| |||||||||||||||| || ||||| || ||||||||||||||||||| | | | |||||| |||| |
|
|
| T |
21943859 |
ttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttgaatcatgaatc |
21943760 |
T |
|
| Q |
291 |
tcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaact |
377 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||||| || ||||||| | |||||| ||||||||| | |||||||||||||| |
|
|
| T |
21943759 |
tcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaagaaaaact |
21943673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2850 times since January 2019
Visitors: 4017