View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0627_high_6 (Length: 415)
Name: NF0627_high_6
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 94 - 365
Target Start/End: Original strand, 39993766 - 39994037
Alignment:
| Q |
94 |
ccatgaataaagtagttttattttgcatttcactttctctctaagccattttccctatctgaatgtgtgttaccataggtcagagtccaatagtgaggag |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39993766 |
ccatgaataaagtagttttattttgcatttcactttctctctaagccattttccctatctgaatgtgtgttaccataggtcaaagtccaatagtgaggag |
39993865 |
T |
|
| Q |
194 |
taaggtatatttataaacaaaataggaacttaaatatcaaaactaacacatagaacaaaggatcaattactaataagaagtacaaaatcaaataatgtga |
293 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39993866 |
taaggtatagtaataaacaaaataggaacttaaatatcaaaactaacacatagaacaaaggatcgattactaataagaagtacaaaatcaaataatgtga |
39993965 |
T |
|
| Q |
294 |
tgagtcattttagagtatgtttgttaccatatatacgattagagtatattttagtgtgatggttgatctctg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39993966 |
tgagtcattttagagtatgtttgttaccatatatacgattagagtatattttcgtgtgatggttgatctctg |
39994037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3358 times since January 2019
Visitors: 4033