View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_1 (Length: 622)
Name: NF0627_low_1
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 48 - 622
Target Start/End: Original strand, 25010967 - 25011543
Alignment:
| Q |
48 |
catcccataacgccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatatca |
147 |
Q |
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| T |
25010967 |
catcccataacaccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatgtca |
25011066 |
T |
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| Q |
148 |
tctagtcagttgcagaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg |
247 |
Q |
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| T |
25011067 |
tctagtcagttgcaaaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg |
25011166 |
T |
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| Q |
248 |
cggtgagtttcagtttaaaaacaaatttgaaattattactattaataaaggttagcactaatgatcatcttacaattgtcccatatagggtttgaactca |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
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| T |
25011167 |
cggtgagtttcagtttaaaaacaaatttgaaattattattattaataaaggttagcactaatgatcattttacaattgttccatataggatttgaactca |
25011266 |
T |
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| Q |
348 |
tgacagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaatccaattctttcactagaagcatcg |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011267 |
tgacagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaatccaattctttcactagaagcatcg |
25011366 |
T |
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| Q |
448 |
tcattgtaacttcactgttattgggg-aaaaacaagagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagc |
546 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011367 |
tcattgtaacttcactgttattggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagc |
25011466 |
T |
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| Q |
547 |
tggtgaaactagtatatctg-aaacacgttgctttgtcaaattatcgtttcgtgtaagtgctatacactattcgaag |
622 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25011467 |
tggtgaaactagtatatctgaaaacacgttgctttgtcaaattatcgtttcgaaaaagtgctatacactattcgaag |
25011543 |
T |
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