View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_12 (Length: 406)
Name: NF0627_low_12
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Complemental strand, 47501702 - 47501332
Alignment:
| Q |
9 |
agcagagaggtgaataacatatcccccagcaaaatcaataaccccacgtttagccaaccaaccatcaggacaccaaatactaaaggcaacaacagtgtac |
108 |
Q |
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| T |
47501702 |
agcagagaggtgaataacatatcccccagcaaaatcaataaccccacgtttagccaaccaaccatcaggacaccaaatactaaaggcaacaacagtgtac |
47501603 |
T |
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| Q |
109 |
gagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagctatcaaaatcaaagtaagaccagcgaaaa |
208 |
Q |
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| T |
47501602 |
gagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagctatcaaaatcaaagtaagaccagcgaaaa |
47501503 |
T |
|
| Q |
209 |
caccttgataaaataccattgtagcattaggaaaattccccaaaaatgctttccccaacaaaaacttttcatctaatgctacatttggtttccctaagaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501502 |
caccttgataaaataccattgtagcattaggaaaattccccaaaaatgctttccccaacaaaaacttttcatctaatgctacatttggtttccctaagaa |
47501403 |
T |
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| Q |
309 |
aaataccattttctccccaaatgacatttggtatgcccatgaaacccaacaaaggagaacggatgcaaatg |
379 |
Q |
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| T |
47501402 |
aaataccattttctccccaaatgacatttggtatgcccatgaaacccaacaaaggagaacggatgcaaatg |
47501332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 13349950 - 13350111
Alignment:
| Q |
81 |
ccaaatactaaaggcaacaacagtgtacgagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagct |
180 |
Q |
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|||||||||||| ||| || |||||| ||||| || | ||| | |||||||||| |||||| ||| | |||||||||||| | | |||||||||| |
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| T |
13349950 |
ccaaatactaaaagcagtaaaagtgtaagagaaagtgagccataaaggcacaaacatcatccaagcatagaagttcattctccccaacacagcaccagct |
13350049 |
T |
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| Q |
181 |
atcaaaatcaaagtaagaccagcgaaaacaccttgataaaataccattgtagcattaggaaa |
242 |
Q |
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|||||||||||||||| | |||| ||||||| |||| || | | ||| |||||||| ||||| |
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| T |
13350050 |
atcaaaatcaaagtaatagcagcaaaaacacattgaaaataaatcatagtagcatttggaaa |
13350111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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