View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_13 (Length: 405)
Name: NF0627_low_13
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 10178269 - 10178461
Alignment:
| Q |
7 |
tccaataatatataagcatgacaattgacaggaattgaaactgatcattgagatcaaattttagattcctttttcaaaattgaatcaaaccaaaagaaat |
106 |
Q |
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| T |
10178269 |
tccaacaacatataagcatgacaattgacaggaattgaaattgatcattgagatcaaattttagattcctttttcaaaattgaatcaaaccaaaagaaat |
10178368 |
T |
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| Q |
107 |
cagatacatatattttaagtttgcttgtacttttgttccccacattttaccactcttgcgaaaagggtccattcatttcaaaatcaaacatgg |
199 |
Q |
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| T |
10178369 |
cggatacatatattttaagtttgattgtacttttgttccccacattttaccactcttgcgaaaagggtccattcatttcaaaatcaaacatgg |
10178461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 240 - 376
Target Start/End: Original strand, 10178504 - 10178639
Alignment:
| Q |
240 |
ccacatttggaccctcaaaaccaattactactataaagcacttttcttttaataatgtgaccaaatccaaagtgaatatatgtacttttcttttaatgaa |
339 |
Q |
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| T |
10178504 |
ccacatttggaccctcaaaaccaattactactataaagcccttttcttttaataatgtgaccaaatccaa-gtgaatatatgtacttttcttttaatgaa |
10178602 |
T |
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| Q |
340 |
gctatacagtagtttgagtcgatgccagaggcggaga |
376 |
Q |
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| T |
10178603 |
gctatacagtagtttgagtcgatgccagaggcggaga |
10178639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 2043021 - 2043064
Alignment:
| Q |
63 |
aattttagattcctttttcaaaattgaatcaaaccaaaagaaat |
106 |
Q |
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| T |
2043021 |
aattttggattcctttttcaaaactgaatcaaaccaaatgaaat |
2043064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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