View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_15 (Length: 362)
Name: NF0627_low_15
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 48236452 - 48236735
Alignment:
| Q |
1 |
gggtacaaagaaaaaatgttgatacatatgattacctcttggttgaattgcttcctgccttgagcagcttcaggatttaagagtttgactgcaactggtg |
100 |
Q |
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| T |
48236452 |
gggtacaaagaaaaaatgttgatgcatatgattacctcttggttgaattgcttcctgccttgagcagcttcaggatttaagagtttgactgcaactggtg |
48236551 |
T |
|
| Q |
101 |
tgtgatgaaggtgacctttaaacacaggtccatatccaccttcacctagtttctttgatggtgagaatctctcggtagcaacttcaatctccatcatagt |
200 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236552 |
tgtgatgaaggtgacctttaaacacaggtccgtatccaccttcacctagtttctttgatggtgagaatctctcggtagcaacttcaatctccatcatagt |
48236651 |
T |
|
| Q |
201 |
gtattttctatatcgattatcattttgagccaatgcattcaatactttattcctctcttctgcctctttcctagccttcatctc |
284 |
Q |
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| T |
48236652 |
gtattttctatatcgattatcattttgagccaatgcattcaatactttattcctctcttctgcctctttcctagccttcatctc |
48236735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 3685920 - 3685864
Alignment:
| Q |
103 |
tgatgaaggtgacctttaaacacaggtccatatccaccttcacctagtttctttgat |
159 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
3685920 |
tgatcaagttgacctttaaacacaggtccatatccaccttcacctattttcattgat |
3685864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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