View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_19 (Length: 326)
Name: NF0627_low_19
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_19 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 107 - 317
Target Start/End: Original strand, 25709 - 25919
Alignment:
| Q |
107 |
ctaagaattgaacttactatgtaccaacaaccctctctgtgcttgcctcagtttccttgcctccaactattcttgctagtccaaaatctgagattttcgg |
206 |
Q |
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| T |
25709 |
ctaagaactgaacttactatgtaccaacaactctctctgtgcttgcctcagtttctttccctccaactattcttgctagtccaaaatctgagattttcgg |
25808 |
T |
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| Q |
207 |
ttgcatctcctcgtctagaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25809 |
ttgcatctcctcgtctagaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaatt |
25908 |
T |
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| Q |
307 |
ccgagaattat |
317 |
Q |
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||||||||||| |
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| T |
25909 |
ccgagaattat |
25919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 112 - 317
Target Start/End: Original strand, 21917881 - 21918086
Alignment:
| Q |
112 |
aattgaacttactatgtaccaacaaccctctctgtgcttgcctcagtttccttgcctccaactattcttgctagtccaaaatctgagattttcggttgca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| | ||||||||| |||||||||||||||||| ||||||| |
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| T |
21917881 |
aattgaacttactatgtaccaacaaccctctctgtgcttgcctctgtttctttgcctgcaaatgttcttgctattccaaaatctgagatttttggttgca |
21917980 |
T |
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| Q |
212 |
tctcctcgtctagaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaattccgag |
311 |
Q |
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| T |
21917981 |
tctcctcatctagaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgggcaattccgag |
21918080 |
T |
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| Q |
312 |
aattat |
317 |
Q |
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|||||| |
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| T |
21918081 |
aattat |
21918086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 259
Target Start/End: Complemental strand, 21936536 - 21936391
Alignment:
| Q |
114 |
ttgaacttactatgtaccaacaaccctctctgtgcttgcctcagtttccttgcctccaactattcttgctagtccaaaatctgagattttcggttgcatc |
213 |
Q |
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| T |
21936536 |
ttgaacttactatgttccaaccactctttctgtgttcgctaccgtctcttttcctccaaatatcctcgctaagccaaagtctgagattttagggttcttc |
21936437 |
T |
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| Q |
214 |
tcctcgtctagaagaatgttgctagttttcaaatctcggtgaataa |
259 |
Q |
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| T |
21936436 |
tcttcgtctagtagaatgttgcttgctttcagatctctatgaataa |
21936391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 287
Target Start/End: Complemental strand, 3102504 - 3102383
Alignment:
| Q |
166 |
cctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaagaatgttgctagttttcaaatctcggtgaataactctaa |
265 |
Q |
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||||||| | ||||||| |||||||||||||||||||| || | ||| || | |||| ||||| ||||||| ||||| |||| |||||||||||| | |
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| T |
3102504 |
cctccaaatgttcttgcaagtccaaaatctgagatttttggattcatttcttgatctaatagaatattgctagctttcaggtctctgtgaataactctga |
3102405 |
T |
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| Q |
266 |
gtcttgagtcttgatgaagata |
287 |
Q |
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| || ||||| | ||||||||| |
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| T |
3102404 |
gcctagagtcctcatgaagata |
3102383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 19379486 - 19379401
Alignment:
| Q |
223 |
agaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaattcc |
308 |
Q |
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| T |
19379486 |
agaagtatgttgctagctttcaagtctctgtgaatgattttgagtcttgagtacttatgaagatagagcaatccttgagcaattcc |
19379401 |
T |
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