View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_2 (Length: 589)
Name: NF0627_low_2
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 15 - 589
Target Start/End: Original strand, 25010967 - 25011543
Alignment:
| Q |
15 |
catcccatagcgccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatatca |
114 |
Q |
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| T |
25010967 |
catcccataacaccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatgtca |
25011066 |
T |
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| Q |
115 |
tctagtcagttgcagaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg |
214 |
Q |
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| T |
25011067 |
tctagtcagttgcaaaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg |
25011166 |
T |
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| Q |
215 |
cggtgagtttcagtttaaaaacaaatttgaaattattactattaataaaggttagcactaatgatcatcttacaattgtcccatatagggtttgaactca |
314 |
Q |
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| T |
25011167 |
cggtgagtttcagtttaaaaacaaatttgaaattattattattaataaaggttagcactaatgatcattttacaattgttccatataggatttgaactca |
25011266 |
T |
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| Q |
315 |
tgacagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaatccaattctttcactagaagcatcg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011267 |
tgacagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaatccaattctttcactagaagcatcg |
25011366 |
T |
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| Q |
415 |
tcattgtaacttcactgttattgggg-aaaaacaagagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagc |
513 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011367 |
tcattgtaacttcactgttattggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagc |
25011466 |
T |
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| Q |
514 |
tggtgaaactagtatatctg-aaacacgttgctttgtcaaattatcgtttcgtgtaagtgctatacactattcgaag |
589 |
Q |
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| T |
25011467 |
tggtgaaactagtatatctgaaaacacgttgctttgtcaaattatcgtttcgaaaaagtgctatacactattcgaag |
25011543 |
T |
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