View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_20 (Length: 323)
Name: NF0627_low_20
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 30573115 - 30572888
Alignment:
| Q |
1 |
cttccgtcaaactcataagttatttgttgagcatgttgatgttttgatttcgagaaggcttaacattttgctttgatgattcacattgttcttcatgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30573115 |
cttccgtcaaactcataagttatttgttgagcatgttgatgttttgatttcgagaaggcttaacattttgttttgatgattcacattgttcttcatgaag |
30573016 |
T |
|
| Q |
101 |
ctactcctcagtcacagcctgaaaaggcatagataagttgaattatttacaattcctgcaatatcatagaatcatatagttatattctataaaaccctag |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30573015 |
ctactcctcagtcacagcctcaaaaggcatagataagttgaattatttacaattcctgcaatatcatagaatcatatagttatattctataaaaccctag |
30572916 |
T |
|
| Q |
201 |
ccatccatttctaatcatacagtaaaag |
228 |
Q |
| |
|
||||| |||||||||||||||||||||| |
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|
| T |
30572915 |
ccatcaatttctaatcatacagtaaaag |
30572888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 30569555 - 30569354
Alignment:
| Q |
27 |
ttgagcatgttgatgttttgatttcgagaaggcttaacattttgctttgatgattcacattgttcttcatgaagctactcctcagtcacagcctgaaaag |
126 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||| |||||||||| |||||||||||||||||||||||| |
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| T |
30569555 |
ttgagcatgttgatgttttgattttgagaaggctttacattttgtcttgatgattcacgttgtccttcatgaaggtactcctcagtcacagcctgaaaaa |
30569456 |
T |
|
| Q |
127 |
gcatagataagttgaattatttacaattcctgcaatatcatagaatcatatagttatattctataaaaccctagccatccatttctaatcatacagtaaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30569455 |
gcatagataagttgaattatttacaattcctgcaatatcatagaatcatatagttatattctataaaaccctagccatccatttctaatcatacagtaaa |
30569356 |
T |
|
| Q |
227 |
ag |
228 |
Q |
| |
|
|| |
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| T |
30569355 |
ag |
30569354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 38419561 - 38419461
Alignment:
| Q |
18 |
agttatttgttgagcatgttgatgttttgatttcgagaaggcttaacattttgctttgatgattcacattgttcttcatgaagctactcctcagtcacag |
117 |
Q |
| |
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|||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| || |||| ||||||| ||| | | |||||||| |
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| T |
38419561 |
agttctttgttgagcttgttgatgttttggtttcgagaaggcttaacattttttcttgatgattcaccttcttctccatgaaggtacacattagtcacag |
38419462 |
T |
|
| Q |
118 |
c |
118 |
Q |
| |
|
| |
|
|
| T |
38419461 |
c |
38419461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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