View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0627_low_21 (Length: 306)

Name: NF0627_low_21
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0627_low_21
NF0627_low_21
[»] chr7 (23 HSPs)
chr7 (51-230)||(9368608-9368787)
chr7 (51-230)||(41883212-41883391)
chr7 (51-230)||(48406030-48406209)
chr7 (51-230)||(17460468-17460647)
chr7 (51-230)||(17592567-17592746)
chr7 (51-230)||(35607597-35607776)
chr7 (52-230)||(42505140-42505318)
chr7 (51-230)||(17837632-17837811)
chr7 (51-230)||(15071489-15071655)
chr7 (51-221)||(10521503-10521672)
chr7 (51-195)||(13322706-13322850)
chr7 (54-203)||(11630494-11630643)
chr7 (54-203)||(11632735-11632884)
chr7 (54-195)||(5538792-5538933)
chr7 (54-203)||(16680134-16680283)
chr7 (54-203)||(17654370-17654519)
chr7 (54-195)||(27450928-27451069)
chr7 (78-194)||(47670445-47670561)
chr7 (95-203)||(34741444-34741552)
chr7 (75-192)||(36980256-36980373)
chr7 (75-203)||(9492093-9492221)
chr7 (121-203)||(37342992-37343074)
chr7 (54-177)||(17747944-17748067)
[»] chr5 (15 HSPs)
chr5 (51-230)||(19038369-19038548)
chr5 (51-230)||(28238939-28239118)
chr5 (51-230)||(8859-9038)
chr5 (49-230)||(28879268-28879449)
chr5 (51-227)||(30707719-30707895)
chr5 (51-203)||(8577772-8577924)
chr5 (54-192)||(38408088-38408226)
chr5 (54-230)||(7760012-7760188)
chr5 (54-203)||(511836-511985)
chr5 (54-203)||(5199442-5199591)
chr5 (54-203)||(42538468-42538617)
chr5 (78-203)||(8699659-8699784)
chr5 (54-203)||(42937871-42938019)
chr5 (54-177)||(38970716-38970839)
chr5 (78-203)||(15939344-15939469)
[»] chr3 (28 HSPs)
chr3 (51-230)||(46401377-46401556)
chr3 (51-230)||(42901362-42901541)
chr3 (51-230)||(46698517-46698696)
chr3 (51-230)||(49141720-49141899)
chr3 (51-230)||(50477979-50478158)
chr3 (51-230)||(34048097-34048276)
chr3 (51-230)||(54388797-54388976)
chr3 (51-230)||(2272258-2272437)
chr3 (51-203)||(4005639-4005791)
chr3 (51-203)||(36130157-36130309)
chr3 (54-230)||(47071382-47071558)
chr3 (51-177)||(52388827-52388953)
chr3 (54-203)||(20353216-20353365)
chr3 (54-179)||(51807851-51807976)
chr3 (54-177)||(41614944-41615067)
chr3 (54-192)||(16646183-16646320)
chr3 (54-192)||(599550-599680)
chr3 (75-203)||(48891213-48891341)
chr3 (75-203)||(50758795-50758923)
chr3 (89-192)||(17562583-17562686)
chr3 (54-196)||(42759337-42759479)
chr3 (54-203)||(44232393-44232542)
chr3 (54-203)||(49266598-49266747)
chr3 (51-123)||(3495550-3495622)
chr3 (54-203)||(48565551-48565700)
chr3 (75-203)||(42805190-42805318)
chr3 (134-195)||(9473034-9473095)
chr3 (54-203)||(30253323-30253472)
[»] chr2 (17 HSPs)
chr2 (51-230)||(17423138-17423317)
chr2 (51-230)||(30494167-30494346)
chr2 (51-230)||(15833928-15834107)
chr2 (51-230)||(43981193-43981372)
chr2 (51-230)||(5354643-5354822)
chr2 (51-230)||(43536910-43537089)
chr2 (51-230)||(45431177-45431356)
chr2 (51-230)||(28471200-28471379)
chr2 (51-212)||(22680191-22680351)
chr2 (51-229)||(39950166-39950344)
chr2 (51-230)||(7189485-7189664)
chr2 (54-230)||(10826117-10826293)
chr2 (54-230)||(29398811-29398987)
chr2 (54-203)||(36653729-36653878)
chr2 (54-192)||(40538214-40538352)
chr2 (71-203)||(7416474-7416606)
chr2 (54-128)||(45292545-45292619)
[»] chr8 (21 HSPs)
chr8 (51-230)||(1055198-1055377)
chr8 (51-230)||(23019493-23019672)
chr8 (51-230)||(26662119-26662298)
chr8 (51-230)||(15033971-15034150)
chr8 (51-230)||(42482712-42482891)
chr8 (51-230)||(22702-22881)
chr8 (51-230)||(486939-487118)
chr8 (51-230)||(43214075-43214254)
chr8 (54-230)||(34367816-34367992)
chr8 (54-230)||(39603963-39604138)
chr8 (54-230)||(41243271-41243447)
chr8 (54-203)||(20858688-20858837)
chr8 (54-203)||(39831976-39832125)
chr8 (63-203)||(34819843-34819983)
chr8 (54-203)||(21176546-21176695)
chr8 (78-203)||(40075926-40076051)
chr8 (78-203)||(45132438-45132563)
chr8 (75-203)||(51778-51906)
chr8 (54-196)||(35554270-35554412)
chr8 (54-203)||(5301540-5301689)
chr8 (78-190)||(5679558-5679672)
[»] chr6 (13 HSPs)
chr6 (51-230)||(6203821-6204000)
chr6 (51-230)||(11690788-11690967)
chr6 (51-230)||(22303902-22304081)
chr6 (55-230)||(27638424-27638599)
chr6 (51-230)||(30826824-30827003)
chr6 (51-230)||(26440113-26440292)
chr6 (51-203)||(31770746-31770898)
chr6 (63-201)||(26172594-26172732)
chr6 (54-203)||(32642567-32642716)
chr6 (54-203)||(2406918-2407067)
chr6 (75-184)||(24086067-24086177)
chr6 (54-203)||(3384104-3384253)
chr6 (75-192)||(18005683-18005800)
[»] chr4 (28 HSPs)
chr4 (51-230)||(1306342-1306521)
chr4 (51-230)||(6179010-6179189)
chr4 (51-230)||(49168183-49168362)
chr4 (51-230)||(30723969-30724148)
chr4 (51-230)||(41796245-41796424)
chr4 (51-230)||(31424412-31424591)
chr4 (51-230)||(49093093-49093272)
chr4 (51-230)||(40355623-40355802)
chr4 (51-227)||(21018801-21018977)
chr4 (54-230)||(44677190-44677366)
chr4 (54-203)||(50277829-50277978)
chr4 (54-230)||(37016791-37016967)
chr4 (54-196)||(50196076-50196218)
chr4 (63-196)||(8109835-8109968)
chr4 (57-203)||(50020919-50021065)
chr4 (54-203)||(51685810-51685959)
chr4 (63-203)||(50904047-50904187)
chr4 (66-192)||(71624-71750)
chr4 (78-203)||(10730227-10730352)
chr4 (78-203)||(10943996-10944121)
chr4 (75-203)||(13624766-13624894)
chr4 (54-203)||(14317284-14317433)
chr4 (54-203)||(46438743-46438892)
chr4 (78-203)||(41931209-41931334)
chr4 (55-203)||(21535449-21535597)
chr4 (132-203)||(30706657-30706728)
chr4 (54-172)||(12891586-12891703)
chr4 (54-192)||(40886874-40887012)
[»] chr1 (19 HSPs)
chr1 (51-230)||(26878388-26878567)
chr1 (51-230)||(3729549-3729729)
chr1 (51-230)||(13637206-13637385)
chr1 (51-203)||(19158692-19158844)
chr1 (51-230)||(95295-95474)
chr1 (51-230)||(31780860-31781039)
chr1 (51-203)||(22526674-22526826)
chr1 (54-203)||(19522504-19522653)
chr1 (54-172)||(50341407-50341525)
chr1 (54-203)||(47505016-47505164)
chr1 (82-203)||(52804570-52804691)
chr1 (54-196)||(11196537-11196679)
chr1 (54-163)||(21143654-21143763)
chr1 (54-203)||(45828251-45828400)
chr1 (54-177)||(47660547-47660670)
chr1 (75-177)||(35256520-35256622)
chr1 (75-192)||(49855261-49855377)
chr1 (54-145)||(23273541-23273632)
chr1 (120-203)||(38120392-38120475)
[»] scaffold0155 (1 HSPs)
scaffold0155 (54-203)||(12025-12174)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 9368787 - 9368608
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9368787 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 9368688  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9368687 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 9368608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 41883212 - 41883391
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41883212 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 41883311  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41883312 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 41883391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 48406030 - 48406209
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48406030 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 48406129  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48406130 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 48406209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 17460647 - 17460468
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17460647 gaggagcacagagagatccaggacttcgaggaggttttctggtattcttgatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 17460548  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17460547 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 17460468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 17592567 - 17592746
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17592567 gaggagcacagagagatccaggacttcgaggaggttttctggtattcttgatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 17592666  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17592667 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 17592746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 35607776 - 35607597
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35607776 gaggagcacagagagatccaggacttcgaggaggttttctggtattctagatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 35607677  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35607676 ttttgaggcagtatggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 35607597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 52 - 230
Target Start/End: Complemental strand, 42505318 - 42505140
Alignment:
Q  52 aggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggt 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  42505318 aggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggtgtccgtagggtgtaccgtcacttgcccaagagggt 42505219  T
Q  152 tttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42505218 tttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgcctttcattgtg 42505140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 17837632 - 17837811
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||    
T  17837632 gaggagcatagagagatccaggacttcgaggaggttttctggtattctggctggattatgtgcggtgtccgtatggtgtaccgtcacttgcccgagatgg 17837731  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  17837732 ttttgaggcagtatggatacgtccagaccatccccagacatccgactgatgttgcagacctcccaccgccttccattgtg 17837811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 15071655 - 15071489
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||   ||          |||||||||| |||||||||||||||||    
T  15071655 gaggagcatagagagatccaggacttcgaggaggttttctggtattctggatggttt---tg----------agggtgtaccatcacttgcccgagaggg 15071569  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15071568 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 15071489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 10521503 - 10521672
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||  ||||| || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||    
T  10521503 gaggagcacatggagatgcatgactttgaggaggttttctggtattctggctggattatgtgcggtgtccgtagggtgtaccgtcacttgcccaaga-gg 10521601  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgcct 221  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||||| |||||||    
T  10521602 ttttgaggcagtacggatacgtccagaccatccccagacatccgactgatgttgcagacctccgaccgcct 10521672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 13322706 - 13322850
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||| | |||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| || || |||| ||||||||||||||||||||||||||    
T  13322706 gaggagaatagagagatccaggattttgaggaggttttatggtattctggctggataatgtgtggtgttcgtaaggtgtaccgtcacttgcccgagaggg 13322805  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccga 195  Q
    |||||||||||||||||||||| |||||| |||||||||||||||    
T  13322806 ttttgaggcagtacggatacgtccagaccgtccccagacatccga 13322850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 11630643 - 11630494
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||| || |||||||| |||| |||||| |||||||||||||    
T  11630643 gagcacagggagatccaggattttgaggaggttttctggtattcaggctggattatgtgcggtgttcgtagggtctaccatcactttcccgagagggttt 11630544  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||| ||||||  ||||| |||| ||||||||||| ||||||    
T  11630543 tgaggcagtacgtatacgtcaagaccgtccctagacatccgacggatgtt 11630494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 11632884 - 11632735
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||| || |||||||| |||| |||||| |||||||||||||    
T  11632884 gagcacagggagatccaggattttgaggaggttttctggtattcaggctggattatgtgcggtgttcgtagggtctaccatcactttcccgagagggttt 11632785  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||| ||||||  ||||| |||| ||||||||||| ||||||    
T  11632784 tgaggcagtacgtatacgtcaagaccgtccctagacatccgacggatgtt 11632735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 5538933 - 5538792
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||||| ||||||    
T  5538933 gagcacagggagatccaggattttgaggaggttttctggtattctggttggattatgtgcggtgttcgtacggtgtaccgtcacttgcccgagtgggttt 5538834  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccga 195  Q
    |||||||||||  |||| |  |||||| ||| ||||||||||    
T  5538833 tgaggcagtacaaatacatctagaccaaccctagacatccga 5538792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 16680134 - 16680283
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| ||  |||||||||| |||||||| || |||||||||||||| || ||||||||||||||||||||| || | |||||||    
T  16680134 gagcacagggagatccaggatttttaggaggttttatggtattcaggctggattatgtgcggtgttcgtagggtgtaccgtcacttgtccaatagggttt 16680233  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||| |||||| ||| |  |||||||||||||||| ||||||    
T  16680234 tgaggcagtacgaatacgtccagcctgtccccagacatccgacggatgtt 16680283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 17654370 - 17654519
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| ||  |||||||||| |||||||| || |||||||||||||| || ||||||||||||||||||||| || | |||||||    
T  17654370 gagcacagggagatccaggatttttaggaggttttatggtattcaggctggattatgtgcggtgttcgtagggtgtaccgtcacttgtccaatagggttt 17654469  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||| |||||| ||| |  |||||||||||||||| ||||||    
T  17654470 tgaggcagtacgaatacgtccagcctgtccccagacatccgacggatgtt 17654519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 27451069 - 27450928
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||| ||   |||||||||||||||||| ||| |||||||||    
T  27451069 gagcacagggagatccaggattttgaggaggttttctggtattcaggctggattatgtgcggtgtttatagggtgtaccgtcactttcccaagagggttt 27450970  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccga 195  Q
    ||||| ||||||||||||| || ||| || ||||| ||||||    
T  27450969 tgaggtagtacggatacgtccaaaccgtctccagatatccga 27450928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 47670561 - 47670445
Alignment:
Q  78 gaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcaga 177  Q
    |||||||| ||||||||||| || |||||||||||||| |  ||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||    
T  47670561 gaggaggtattctggtattcaggctggattatgtgcggtgatcgtagggtgcaccgtcacttgcccgaaagggttttgaggcagtacggatacgtccaga 47670462  T
Q  178 ccatccccagacatccg 194  Q
    || | || |||||||||    
T  47670461 ccgtacctagacatccg 47670445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 34741444 - 34741552
Alignment:
Q  95 ttctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcagaccatccccagacatccg 194  Q
    |||||| |||||||||||||| || |||||  ||||| ||||||||||||| |||||||||| ||||||||||||||| |||||| |||||||||||| |    
T  34741444 ttctggctggattatgtgcggtgttcgtagaatgtactgtcacttgcccgatagggttttgaagcagtacggatacgtccagaccgtccccagacatctg 34741543  T
Q  195 actgatgtt 203  Q
    || ||||||    
T  34741544 acggatgtt 34741552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 36980256 - 36980373
Alignment:
Q  75 ttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgc 174  Q
    ||||||||||| |||  |||||| || || |||||||| || |  |||||||||||||||||||| ||||||||| |||||||||||||||||||||| |    
T  36980256 ttcgaggaggtattcctgtattcaggctgaattatgtgtggtgatcgtagggtgtaccgtcactttcccgagaggattttgaggcagtacggatacgtcc 36980355  T
Q  175 agaccatccccagacatc 192  Q
    ||||  |||| |||||||    
T  36980356 agactgtccctagacatc 36980373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 9492221 - 9492093
Alignment:
Q  75 ttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgc 174  Q
    |||||| |||| |||| | |||| || | ||||||||| || |  ||||| |||||||||||||| |||||||||||||| |||||||||||||||   |    
T  9492221 ttcgagaaggtattctagcattcaggtttgattatgtgtggtgatcgtagagtgtaccgtcactttcccgagagggttttaaggcagtacggatacaccc 9492122  T
Q  175 agaccatccccagacatccgactgatgtt 203  Q
    |||||||||| ||||||||| | ||||||    
T  9492121 agaccatccctagacatccgtcggatgtt 9492093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 37342992 - 37343074
Alignment:
Q  121 gtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||||||||||||| |||||||| || ||||| ||||||||||| ||||| | ||| ||||||||| | ||||||    
T  37342992 gtagggtgtaccgtcacttgcctgagagggtgttaaggcaatacggatacgtccagacaaaccctagacatccggcggatgtt 37343074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 17748067 - 17747944
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| || |||||| ||||||||||||| |  |||||||||||| | ||    | ||||||  |||||||||| ||||| |||     
T  17748067 gagcacagggagatccaggattttgaggagattttctggtattcagtttggattatgtgcagtgttgacaaggtgtattgtcacttgcctgagagagtta 17747968  T
Q  154 tgaggcagtacggatacgtgcaga 177  Q
     | |||||||||||||||||||||    
T  17747967 ggcggcagtacggatacgtgcaga 17747944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 19038548 - 19038369
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19038548 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 19038449  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19038448 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 19038369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 28239118 - 28238939
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28239118 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgcccgtagggtgtaccgtcacttgcccgagaggg 28239019  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28239018 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 28238939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 9038 - 8859
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9038 gaggagcacagagagatccaggacttcgaggaggttttctggtattttggctggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 8939  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  8938 ttttgaggcagtacagatacgtgcagaccatccccagacatccgactgatgttagggacctcccgccgcctcccattgtg 8859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 49 - 230
Target Start/End: Original strand, 28879268 - 28879449
Alignment:
Q  49 aggaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagag 148  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  28879268 aggaggagcacagagagatccaggacttcgaggagattttctggtattcaggctggatcatgtgcggtgtccgtagggtgtaccgtcacttgcccgagag 28879367  T
Q  149 ggttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  28879368 ggttttgaggcagtacggatacgtgcagaccatccccagacatccgattgatgttagggacctcccaccgtcttccattgtg 28879449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 30707719 - 30707895
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  30707719 gaggagcacagagagatccaggacttcgaggaggttttctggtattatgggtggattatgtgtggtgtccgtagggtgtaccgtcacttgcccgagaggg 30707818  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccatt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  30707819 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgctgttagggacctcccaccgtcttccatt 30707895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 51 - 203
Target Start/End: Complemental strand, 8577924 - 8577772
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8577924 gaggagcacagagagatccaggacttcgaggaggttttctggtattctgggtggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 8577825  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  8577824 ttttgaggcagtacggatacgtgcagaccatccccagacatcccacggatgtt 8577772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 38408226 - 38408088
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||| || || ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  38408226 gagcacagggagatccatgattttgaggaggttttctggtattctggctggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagggttt 38408127  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatc 192  Q
    ||||||||||||||||||| |||||| |||||| |||||    
T  38408126 tgaggcagtacggatacgtccagaccgtccccatacatc 38408088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 54 - 230
Target Start/End: Original strand, 7760012 - 7760188
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||| ||||| ||  ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  7760012 gagcacagggagatccaagactttgaacaggttttctggtattcttgatggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagggttt 7760111  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||| || |||||| |||||||||||||||||||  || ||||||   ||||| ||||||| || |||||||    
T  7760112 tgaggcagtgcgaatacgtccagaccatccccagacatctaacggatgttgtagacctgccaccgctttacattgtg 7760188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 511985 - 511836
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||| |||| || ||||||||||||||||||||  | |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  511985 gagcacagggagatctaggattttgaggaggttttctggtattcatgctggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagggttt 511886  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||||||||||| |||| | |||| |||||| |||| ||||||    
T  511885 tgaggcagtacggatacgtccagagcgtccctagacattcgacggatgtt 511836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 5199442 - 5199591
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| || || ||||||||||||||||| || || ||||||||||  || ||||||||||||||||||||||||||||||||||    
T  5199442 gagcacagggagatccaggattttgaagaggttttctggtattcaggctgaattatgtgcgatgttcgtagggtgtaccgtcacttgcccgagagggttt 5199541  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||||||||||| ||||   |||| ||||||||||| ||||||    
T  5199542 tgaggcagtacggatacgtccagagggtccctagacatccgacggatgtt 5199591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 42538468 - 42538617
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||  ||||||||||| || |||||||||||||||||||| || |||||||||||||| || | ||||||||||||||||||||||||||||||||    
T  42538468 gagcacatggagatccaggattttgaggaggttttctggtattcaggctggattatgtgcggtgttcatagggtgtaccgtcacttgcccgagagggttt 42538567  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||| ||| || |||| | |||| ||||||||||| ||||||    
T  42538568 tgaggcagtacgaatatgtccagagcgtccctagacatccgacggatgtt 42538617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 8699784 - 8699659
Alignment:
Q  78 gaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcaga 177  Q
    |||||||| ||||||||||| || |||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  8699784 gaggaggtattctggtattcaggctggattatgtgcggtgatcgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtctaga 8699685  T
Q  178 ccatccccagacatccgactgatgtt 203  Q
    ||  ||| ||||||||| | ||||||    
T  8699684 ccgcccctagacatccgtcggatgtt 8699659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 42938019 - 42937871
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||| || ||  ||||||||||||||| ||| || ||||| |||||||| || |||||||||| | |||||||||||||| ||||||    
T  42938019 gagcacagggagatccaagatttttaggaggttttctggttttcaggctggatcatgtgcggtgttcgtagggtgttc-gtcacttgcccgagggggttt 42937921  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||| ||||||| |||||  |||| || |||| ||| ||||||    
T  42937920 tgaggcagtacagatacgtccagactgtccctaggcatctgacggatgtt 42937871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 38970716 - 38970839
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||  || |||||| | || |||||||| || |||||||| ||| | || | || |||||||||||||||||| |||||||| |    
T  38970716 gagcacagggagatccagggttttgaggagatattatggtattcaggctggattatttgcagtgttcataaggtgtaccgtcacttgcctgagagggtgt 38970815  T
Q  154 tgaggcagtacggatacgtgcaga 177  Q
    ||||||||||| ||||||| ||||    
T  38970816 tgaggcagtacagatacgtacaga 38970839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 15939344 - 15939469
Alignment:
Q  78 gaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcaga 177  Q
    |||||| |||||| |||||| ||||| |||||||| || || ||||| |||||| ||||  ||| | ||||| ||||||||||||||||||| || ||||    
T  15939344 gaggagcttttctagtattcaggatgaattatgtgtggtgttcgtagagtgtactgtcatctgctcaagaggattttgaggcagtacggatatgtccaga 15939443  T
Q  178 ccatccccagacatccgactgatgtt 203  Q
    |  |||| |||||||||| |||||||    
T  15939444 cggtccctagacatccgattgatgtt 15939469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 46401377 - 46401556
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46401377 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 46401476  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46401477 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 46401556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 42901541 - 42901362
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42901541 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 42901442  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42901441 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 42901362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 46698696 - 46698517
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46698696 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 46698597  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46698596 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 46698517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 49141899 - 49141720
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49141899 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 49141800  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49141799 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 49141720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 50478158 - 50477979
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50478158 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 50478059  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50478058 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 50477979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 34048097 - 34048276
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34048097 gaggagcacatagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccatagggtgtaccgtcacttgcccgagaggg 34048196  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34048197 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 34048276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 54388797 - 54388976
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54388797 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggcgtaccgtcacttgcccgagaggg 54388896  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  54388897 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgattttagggacctccccccgccttccattgtg 54388976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 2272437 - 2272258
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2272437 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggctggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 2272338  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||    
T  2272337 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttgcagacctcccaccgctttccattgtg 2272258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 203
Target Start/End: Complemental strand, 4005791 - 4005639
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4005791 gaggagcacagagagatccaggacttcgaggatgttttctggtattctggctggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 4005692  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||||||||||| ||||||||||||| |||||||| || ||||||    
T  4005691 ttttgaggcagtacggatacatgcagaccatccctagacatcccacggatgtt 4005639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 36130157 - 36130309
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||    
T  36130157 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggctggattatgtgtggtgtccgtagggtgtaccgtcactttcccgagaggg 36130256  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  36130257 ttttgaggcagtacagatacgtgcagaccatccccagacatcccacggatgtt 36130309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 47071558 - 47071382
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||  |||||||| |||||||| |||||||||||||||||||||||||||||| |||    
T  47071558 gagcacagggagatccaggactttgaggaggttttctggtattctgactggattatatgcggcgttcgtagggtgtaccgtcacttgcccgagaggattt 47071459  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||   |||||||||||||||| |||||||    
T  47071458 tgaggcagtacggatacgtccagaccatccccagacatccgacggatgttgtagacctcccaccgccttacattgtg 47071382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 52388953 - 52388827
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  52388953 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggctggataatgtgcggtgtccgtagggtgtaccgtcacttgtccgagaggg 52388854  T
Q  151 ttttgaggcagtacggatacgtgcaga 177  Q
    |||||||| ||||  ||||||||||||    
T  52388853 ttttgaggtagtatagatacgtgcaga 52388827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 20353216 - 20353365
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    ||||| || ||||||||||| || |||||| ||||||||||||| || |||||||||||||| || ||||||||||||||||||||||| ||||||| ||    
T  20353216 gagcatagggagatccaggattttgaggagattttctggtattcaggctggattatgtgcggtgttcgtagggtgtaccgtcacttgcctgagaggggtt 20353315  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||| ||||||    
T  20353316 tgaggcagtacggatacgtccagacgatccctagacatccgacggatgtt 20353365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 51807851 - 51807976
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||| || || |||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  51807851 gagcacagggagatccaagattttgaggaggttttctggtattcaggctggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagggttt 51807950  T
Q  154 tgaggcagtacggatacgtgcagacc 179  Q
    ||||||||||||||||||| ||||||    
T  51807951 tgaggcagtacggatacgtccagacc 51807976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 41614944 - 41615067
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| || ||||||||||| |||||||| || |||||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  41614944 gagcacagggagatccaggattttgaggaggttttatggtattcaggctggattatgtgcggtgttcgtagggtgtatcgtcacttgcccgagagggttt 41615043  T
Q  154 tgaggcagtacggatacgtgcaga 177  Q
    ||||||||||||||||||| ||||    
T  41615044 tgaggcagtacggatacgtccaga 41615067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 16646183 - 16646320
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||||||||| ||| |||| |||||||||||||| || ||||||||||| || |||||||||||||||||||| ||||| |||||||    
T  16646183 gagcacagggagatccaggactttgagaaggtattctggtattctggctg-attatgtgcggtgttcgtagggtgtaccgtcactttcccgatagggttt 16646281  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatc 192  Q
    ||||||||||||||||| | ||||||||||| |||||||    
T  16646282 tgaggcagtacggatacatccagaccatcccaagacatc 16646320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 599550 - 599680
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||||||||| |||||||||||||||         ||||||||||| || || ||||||||||||||||||||||||||||||||||    
T  599550 gagcacagggagatccaggactttgaggaggttttctggc--------tggattatgtgtggtgttcgtagggtgtaccgtcacttgcccgagagggttt 599641  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatc 192  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  599642 tgaggcagtacggatacgtccagaccatcctcagacatc 599680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 48891213 - 48891341
Alignment:
Q  75 ttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgc 174  Q
    ||||||||||| ||||||||||| || |||||||| ||| | || |||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48891213 ttcgaggaggtattctggtattcaggctggattatatgcagtgttcgtaaggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtcc 48891312  T
Q  175 agaccatccccagacatccgactgatgtt 203  Q
    ||||| |||| ||||||||| | ||||||    
T  48891313 agaccgtccctagacatccgtcggatgtt 48891341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 50758795 - 50758923
Alignment:
Q  75 ttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgc 174  Q
    ||||||||||| ||||||||||| || |||||||||||||| |   |||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  50758795 ttcgaggaggtattctggtattcaggctggattatgtgcggtgattgtagggtgtaccgtcacttgaccgagagggttttgaggcagtacggatacgtcc 50758894  T
Q  175 agaccatccccagacatccgactgatgtt 203  Q
    ||||| |||| ||||||||| | ||||||    
T  50758895 agaccgtccctagacatccgccggatgtt 50758923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 17562686 - 17562583
Alignment:
Q  89 ctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcagaccatccccaga 188  Q
    ||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||    
T  17562686 ctggtattcaggctggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtccagaccgtccctaga 17562587  T
Q  189 catc 192  Q
    ||||    
T  17562586 catc 17562583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 42759337 - 42759479
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||| || || ||||||  |||||||||||| || || ||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  42759337 gagcacagggagatccaagattttgaggagcctttctggtattcaggctgaattatgtgcggtgttcgtagggtgtagcgtcacttgcccgagagggttt 42759436  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgac 196  Q
    ||||||||||||||||| | |||| | |||| |||||||||||    
T  42759437 tgaggcagtacggatacatccagagcgtccctagacatccgac 42759479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 44232393 - 44232542
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||  ||||||||||| ||  ||||||||||||||||||| || ||||||||||| || || | |||||||||| |||||||   |||||||||||    
T  44232393 gagcacatggagatccaggattttaaggaggttttctggtattcaggctggattatgtgtggtgttcatagggtgtactgtcactttttcgagagggttt 44232492  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||| ||||||||| |||||| |||||||||||| ||| ||||||    
T  44232493 tgaggcagtgcggatacgtccagaccgtccccagacatctgacagatgtt 44232542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 49266747 - 49266598
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||  ||||||||| | || |||||||||||||||||||  || ||||||||||| || |  |||||||| |||||||| ||||||||||||||||    
T  49266747 gagcacaaggagatccagaattttgaggaggttttctggtatttaggctggattatgtgaggtggtcgtagggtctaccgtcatttgcccgagagggttt 49266648  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||||| |||| |||||| |||||| ||||| ||| ||||||    
T  49266647 tgaggcagtacggagacgtccagaccgtccccaaacatctgacggatgtt 49266598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 3495622 - 3495550
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgta 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  3495622 gaggagcacagagagatccaggacttcgaggaggttttctggtattctgggtggattatgtgcggtgtccgta 3495550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 48565551 - 48565700
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||| | ||||||||||| || |||||||||||||||| ||| || | ||||||||| || || |||||||||||| ||||||| |||||| ||||||    
T  48565551 gagcactgggagatccaggattttgaggaggttttctggtgttcaggctagattatgtgtggtgttcgtagggtgtactgtcacttacccgagcgggttt 48565650  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||| ||||||| |||| | ||   ||||||||||| ||||||    
T  48565651 tgaggcagtacagatacgtccagagcgtctttagacatccgaccgatgtt 48565700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 42805318 - 42805190
Alignment:
Q  75 ttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgc 174  Q
    ||||||||||| ||||||||||| || |||||||||||||| |  | || |||| ||||||||| |||||||||| |||||||||||||| ||||||| |    
T  42805318 ttcgaggaggtattctggtattcaggctggattatgtgcggtgatcatacggtgcaccgtcactagcccgagaggattttgaggcagtacagatacgttc 42805219  T
Q  175 agaccatccccagacatccgactgatgtt 203  Q
     |||| |||| ||||||||| | ||||||    
T  42805218 ggaccgtccctagacatccgtcggatgtt 42805190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 9473034 - 9473095
Alignment:
Q  134 tcacttgcccgagagggttttgaggcagtacggatacgtgcagaccatccccagacatccga 195  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  9473034 tcacttgcccgagagggttttgaggcagtacagatacgtccagaccgtccccagacatccga 9473095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 30253472 - 30253323
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||  ||||||  ||||||||||| || |||||||| || ||||||||||| || |  |  ||||| ||||||||||||| |||||||||||    
T  30253472 gagcacagggacttccaggctttcgaggaggtattatggtattcaggctggattatgtgtggtgatcagagggtataccgtcacttgctcgagagggttt 30253373  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||| ||||| | || ||| |||| ||||||||| | ||||||    
T  30253372 tgaggcagtacagatacatccaaaccgtccctagacatccgtcggatgtt 30253323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 17423138 - 17423317
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17423138 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 17423237  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17423238 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 17423317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 30494346 - 30494167
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30494346 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 30494247  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30494246 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 30494167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 15833928 - 15834107
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15833928 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgtccgagaggg 15834027  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15834028 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 15834107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 43981193 - 43981372
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43981193 gaggagcacagagagatccaagacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 43981292  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43981293 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 43981372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 5354643 - 5354822
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354643 gaggagcatagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 5354742  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5354743 ttttgaggcagtacggatacgtgtagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 5354822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 43537089 - 43536910
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43537089 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 43536990  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  43536989 ttttgaggcagtacggatacatgcagactatccccagacatctgactgatgttagggacctccccccgccttccattgtg 43536910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 45431177 - 45431356
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  45431177 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggctggattatgtgtggtgtccgtagggtgtaccgtcacttgcccgagaggg 45431276  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45431277 ttttgaggcagtatggatacgtgcagaccatccccagacatcctactgatgttagggacctcccaccgccttccattgtg 45431356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 28471200 - 28471379
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28471200 gaggagcacagagagatccaggacttcgaggaggttttttggtattctgggtggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 28471299  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  28471300 ttttgaggtagtacagatacgtgcagaccatccccagacatccgactgatgttagggatctcccaccgtcttccattgtg 28471379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 22680191 - 22680351
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22680191 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggttggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 22680290  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctc 212  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22680291 ttttgaggcagtacggatacgtgcagaccat-cccagacatccgactgatgttagggacctc 22680351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 39950166 - 39950344
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  39950166 gaggagcacagggagatccaggactttgaggaggttttctggtattctggctggattatgtgcggtgtctgtagggtgtaccgtcacttgcccgagaggg 39950265  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgt 229  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||   |||||||||||||||| ||||||    
T  39950266 ttttgaggcagtacggatacgtccagaccatccgcagacatccgactgatgttgcagacctcccaccgccttacattgt 39950344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 7189485 - 7189664
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||  |||||||||||||| || |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7189485 gaggagcacatggagatccaggactttgaagaggttttctggtattctgactggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 7189584  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||| ||||| |||||||    
T  7189585 ttttgaggcagtacggatacgtccagaccatccccagacatccgactgatgttgtagacctcccactgccttacattgtg 7189664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 10826293 - 10826117
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||| ||||| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  10826293 gagcacagggagatccaagactttgatgaggttttctggtattctggctggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagggttt 10826194  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||| |||||||||| |||||||||||| ||||||   ||||| |||||||||| |||||||    
T  10826193 tgaggcagtacggatacgtccagaccatccgcagacatccgacggatgttgtagacctgccaccgccttacattgtg 10826117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 29398987 - 29398811
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  29398987 gagcacagggagatccaggactttgaggaggttttctggtattctggctggattatgtgcggtgttcgtagggtgtaccgttacttgcccgagagggttt 29398888  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||   ||| | |||||||||| |||||||    
T  29398887 tgaggcagtacggatacgtcctgaccatccccagacatccgacggatgttgtagacttgccaccgccttacattgtg 29398811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 36653878 - 36653729
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||| || || ||||||||||| |||||||| || |||||||||||||| || | ||||||||||||||||||| ||||||||||||    
T  36653878 gagcacagggagatccatgattttgaggaggttttttggtattcaggttggattatgtgcggtgttcatagggtgtaccgtcacttgtccgagagggttt 36653779  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||| ||||||| |||||| |||||||||||||||| ||||||    
T  36653778 tgaggcagtacagatacgtccagaccgtccccagacatccgaccgatgtt 36653729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 40538214 - 40538352
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||  ||||||  ||||||||||| || |||||||| || |||||||||||||  |  ||||||||| |||||||||| |||||||||||||    
T  40538214 gagcacagggacttccaggctttcgaggaggtattttggtattcaggctggattatgtgcgatgatcgtagggtgcaccgtcactttcccgagagggttt 40538313  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatc 192  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  40538314 tgaggcagtacggatacgtccagaccatccctagacatc 40538352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 7416474 - 7416606
Alignment:
Q  71 ggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatac 170  Q
    ||||||| ||||||| ||||||||||| || ||||||||||||   |  |||| |||| |||||||||||||||| |||||||||||||||||||||||     
T  7416474 ggacttccaggaggtattctggtattcaggctggattatgtgcaatgatcgtaaggtgcaccgtcacttgcccgatagggttttgaggcagtacggatat 7416573  T
Q  171 gtgcagaccatccccagacatccgactgatgtt 203  Q
    || |||||| |||| ||||||||| | ||||||    
T  7416574 gtccagaccgtccctagacatccgtcggatgtt 7416606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 45292545 - 45292619
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtg 128  Q
    |||||||| ||||||| ||| || ||||||||||||| |||||| || |||||||||||| | || |||||||||    
T  45292545 gagcacagggagatccgggattttgaggaggttttctagtattcaggctggattatgtgcagtgttcgtagggtg 45292619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 1055198 - 1055377
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1055198 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 1055297  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1055298 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 1055377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 23019672 - 23019493
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23019672 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 23019573  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23019572 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 23019493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 26662119 - 26662298
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26662119 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 26662218  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26662219 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 26662298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 15034150 - 15033971
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15034150 gaggagcacagagagatccaggacttcgaggaggttttctggtattctgggtggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 15034051  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15034050 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttaggaacctcccaccgccttccattgtg 15033971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 42482891 - 42482712
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42482891 gaggagcacagaaagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagga 42482792  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42482791 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 42482712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 22881 - 22702
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  22881 gaggagcacagagagatctaggacttcgaggaggttttctggtattctggatggattatgtgtggcatccgtagggtgtaccgtcacttgcccgagaggg 22782  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22781 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 22702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 487118 - 486939
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  487118 gaggagcacaaagagattcaggacttcgaggaggtttcctggtattctggatggattatgtgcggcgtctgtagggtgtaccgtcacttgcccgagaggg 487019  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  487018 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 486939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 43214075 - 43214254
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  43214075 gaggagcacagggagatgcaggactttgaggaggttttctggtattctggctggattatgtgcggtgtccgtaggatgtaccgtcacttgcccgagaggg 43214174  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||   ||||||| |||||||| |||||||    
T  43214175 ttttgaggcagtacgaatacgtccagaccatccccagacatccgactgatgttgcagacctccgaccgccttacattgtg 43214254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 34367992 - 34367816
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||| |||||||| ||||||||||||||||||||    
T  34367992 gagcatagggagatccaggactttgaggaggttttctggtattctggctggattatgtgcggtgtctgtatggtgtaccttcacttgcccgagagggttt 34367893  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||||||   |||||||||||||||| |||||||    
T  34367892 tgaggcagtacgaatacgtccagaccatcctcagacatccgactgatgttgtagacctcccaccgccttacattgtg 34367816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 54 - 230
Target Start/End: Original strand, 39603963 - 39604138
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||    
T  39603963 gagcacagggagatccaggactttgaggtggttttctcgtattctggatggattatgtgcggtgttcgtagggtgtaccgtcacttgcccaagagggttt 39604062  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||| |||||| |||||||| |||||||||||||| ||||||   ||||| |||||||||| |||||||    
T  39604063 tgaggcagtacgaatacgtccagaccat-cccagacatccgacggatgttgtagacctgccaccgccttacattgtg 39604138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 41243447 - 41243271
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||| ||||| |||||| |||| ||||||||||| |||||||||||||  || ||||||||||||||||||||||| ||||| ||||    
T  41243447 gagcacagggagatccatgactttgaggagattttatggtattctggctggattatgtgcgctgttcgtagggtgtaccgtcacttgccagagagtgttt 41243348  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||   ||||| |||||||||| |||||||    
T  41243347 tgaggcagtacggatacgtccagaccatccccagacatccgacagatgttgtagacctgccaccgccttacattgtg 41243271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 20858688 - 20858837
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    ||||| || ||||||||| | || |||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  20858688 gagcatagggagatccagaattttgaggaggttttctggtattcaggctggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagggttt 20858787  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||||||||||| |||||| |||||| ||||||||| ||||||    
T  20858788 tgaggcagtacggatacgtccagaccgtccccaaacatccgacggatgtt 20858837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 39832125 - 39831976
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| || ||||||||||| |||||||| || |||||||||||||| || | || ||||||||||||||| |||||||||||||    
T  39832125 gagcacagggagatccaggattttgaggaggttttgtggtattcaggctggattatgtgcggtgttcctaaggtgtaccgtcacttacccgagagggttt 39832026  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    | ||||||||||||||||| |||||| || ||||||||||||| ||||||    
T  39832025 taaggcagtacggatacgtccagaccgtctccagacatccgaccgatgtt 39831976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 34819983 - 34819843
Alignment:
Q  63 gagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagt 162  Q
    |||||||| || || |||||||||||||||||||| || ||||||||||||||  | |||||| ||||||||||||||||||||||||||||||||||||    
T  34819983 gagatccaagattttgaggaggttttctggtattcaggctggattatgtgcggtattcgtaggatgtaccgtcacttgcccgagagggttttgaggcagt 34819884  T
Q  163 acggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||| |||| | |||| ||||||||||| ||||||    
T  34819883 acggatacgtccagagcgtccctagacatccgacggatgtt 34819843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 21176695 - 21176546
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||  || |||||||||||||||||||| || |||||||||||||| || |||||| ||||||||||||| |  ||||||||||    
T  21176695 gagcacagggagatccagggttttgaggaggttttctggtattcaggctggattatgtgcggtgttcgtaggatgtaccgtcactttcttgagagggttt 21176596  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    || ||||||| |||||||| |||| |||||| ||||||||||| ||||||    
T  21176595 tgcggcagtaaggatacgtccagagcatccctagacatccgacggatgtt 21176546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 40076051 - 40075926
Alignment:
Q  78 gaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcaga 177  Q
    |||||| |||||| |||||| || |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||    
T  40076051 gaggagattttctagtattcaggctggattatgtgcggtgttcgtagggtgtatcgtcacttgcccgagagggttttgaggcagtacagatacatccaga 40075952  T
Q  178 ccatccccagacatccgactgatgtt 203  Q
      ||||| ||||||| ||| ||||||    
T  40075951 gaatccctagacatcagacggatgtt 40075926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 45132438 - 45132563
Alignment:
Q  78 gaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcaga 177  Q
    ||||||||||| |||||||| ||||||||||||||||| || ||||| |||||||| ||  |||||||||||||||||||| ||||||||||||| ||||    
T  45132438 gaggaggttttttggtattcaggatggattatgtgcggtgttcgtagagtgtaccgacatctgcccgagagggttttgaggtagtacggatacgtccaga 45132537  T
Q  178 ccatccccagacatccgactgatgtt 203  Q
       |||| ||||||||||| ||||||    
T  45132538 tggtccctagacatccgacggatgtt 45132563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 51778 - 51906
Alignment:
Q  75 ttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgc 174  Q
    ||||||| ||| ||||| |||||  | | |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51778 ttcgagggggtattctgatattcatgctagattatgtgcggtgatcgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtcc 51877  T
Q  175 agaccatccccagacatccgactgatgtt 203  Q
    || || |||| ||||||||| | ||||||    
T  51878 agtccgtccctagacatccgtcagatgtt 51906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 35554270 - 35554412
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||  ||||||||||  ||  ||||| | ||||||||| | || |||||||| || || || ||||||||||||||||||||||||||||||||||    
T  35554270 gagcacatggagatccagggttttaaggagatattctggtatccaggctggattatttgtggtgttcgtagggtgtaccgtcacttgcccgagagggttt 35554369  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgac 196  Q
    ||||||||||||||||||| ||||   |||| |||||||||||    
T  35554370 tgaggcagtacggatacgtccagagggtccctagacatccgac 35554412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 5301689 - 5301540
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    ||||||||  |||||||||| || ||||||||||||||||||||  | |||||||||||||| ||  || |||| |||||||||||| || || || |||    
T  5301689 gagcacaggaagatccaggattttgaggaggttttctggtattcaagctggattatgtgcggtgtttgttgggtctaccgtcacttgtccaagtggattt 5301590  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||| ||||||||||||| || ||| |||| ||||||||||| ||||||    
T  5301589 tgaggtagtacggatacgtccataccgtccctagacatccgacggatgtt 5301540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 5679558 - 5679672
Alignment:
Q  78 gaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgta--ccgtcacttgcccgagagggttttgaggcagtacggatacgtgca 175  Q
    |||||||||||||||||||| || |||||||||| ||| ||  ||||||||||  |||||||||||| |||||||||||| |||||||||||||||| ||    
T  5679558 gaggaggttttctggtattcaggctggattatgtacggtgtttgtagggtgtataccgtcacttgcctgagagggttttgcggcagtacggatacgtcca 5679657  T
Q  176 gaccatccccagaca 190  Q
    || | |||| |||||    
T  5679658 gagcgtccctagaca 5679672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 8e-95; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 6203821 - 6204000
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6203821 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 6203920  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6203921 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 6204000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 11690788 - 11690967
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11690788 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 11690887  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11690888 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 11690967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 22303902 - 22304081
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22303902 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 22304001  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22304002 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 22304081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 27638424 - 27638599
Alignment:
Q  55 agcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggtttt 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27638424 agcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggtttt 27638523  T
Q  155 gaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27638524 gaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 27638599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 30827003 - 30826824
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30827003 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 30826904  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30826903 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 30826824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 26440113 - 26440292
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||  |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26440113 gaggagcacaaggagatccatgactttgaggaggttttctggtattctggttggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 26440212  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||   |||||||||| ||||| |||||||    
T  26440213 ttttgaggcaatacggatacgtccagaccatccctagacatctgactgatgttgtagacctcccactgccttacattgtg 26440292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 31770746 - 31770898
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||| || || ||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||    
T  31770746 gaggagcacagagagatccatgattttgaggaggttttatggtattctggctggattatgtgcggtgttcgtagggtgtaccgtcacttgcctgagaggg 31770845  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  31770846 ttttgaggcagtacggatacgtccagaccgtccccagacatccgacggatgtt 31770898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 26172594 - 26172732
Alignment:
Q  63 gagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagt 162  Q
    ||||||||||| || |||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  26172594 gagatccaggattttgaggaggttttctggtattcaggctggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagagttttgaggcagt 26172693  T
Q  163 acggatacgtgcagaccatccccagacatccgactgatg 201  Q
    |||||||||| |||||| |||||||||||||||| ||||    
T  26172694 acggatacgtccagaccgtccccagacatccgacggatg 26172732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 32642567 - 32642716
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||||||  ||||||  ||||||||||| ||||||||||| || || ||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  32642567 gagcacagagacttccaggctttcgaggaggtattctggtattcaggctgaattatgtgcggtgatcgtagggtgtaccgtcacttgcccgagagggttt 32642666  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||||||||||| | |||| |||| ||||||||| | ||||||    
T  32642667 tgaggcagtacggatacgtcctgaccgtccctagacatccgtcggatgtt 32642716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 2406918 - 2407067
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| || |||||||| ||||| || |||||||| ||| ||||||||| |||||||||||    
T  2406918 gagcacagggagatccaggactttgagtaggttttctggtattcaggctggattatatgcggtgtacgtagggtctactgtcacttgctcgagagggttt 2407017  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    | ||||| |||||||||||  ||||| |||| | ||||||||| ||||||    
T  2407018 taaggcaatacggatacgtctagaccgtccctaaacatccgacggatgtt 2407067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 24086177 - 24086067
Alignment:
Q  75 ttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttg-cccgagagggttttgaggcagtacggatacgtg 173  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||| |||||||     
T  24086177 ttcgaggaggtattctggtattcaggatggattatgtgcggtgatcgtagggtgtaccgtcacttgccccgagagggttttgaggcagtacagatacgtc 24086078  T
Q  174 cagaccatccc 184  Q
    |||||| ||||    
T  24086077 cagaccgtccc 24086067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 3384104 - 3384253
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||  || ||| || | || |||||||| || |||||||| ||||| || ||||||||| ||||||||||||| |||||||| |    
T  3384104 gagcacagggagatccagggttttgagaagatattatggtattcaggctggattatttgcggtgttcgtagggtgcaccgtcacttgcctgagagggtgt 3384203  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||||||||||| || || ||||| |||||||| || ||||||    
T  3384204 tgaggcagtacggatacgtccatacgatccctagacatcctacggatgtt 3384253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 18005800 - 18005683
Alignment:
Q  75 ttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgc 174  Q
    ||||||||||| |||| |||||| || ||||||| ||| || |   |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |    
T  18005800 ttcgaggaggtattctagtattcaggctggattacgtgtggtgattgtagggtgcaccatcacttgcccgagagggttttgaggcagtacggatacgtcc 18005701  T
Q  175 agaccatccccagacatc 192  Q
    ||||| |||| |||||||    
T  18005700 agaccgtccctagacatc 18005683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 1306521 - 1306342
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1306521 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 1306422  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1306421 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 1306342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 6179189 - 6179010
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6179189 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 6179090  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6179089 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 6179010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 49168183 - 49168362
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49168183 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 49168282  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49168283 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 49168362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 30724148 - 30723969
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30724148 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 30724049  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30724048 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttcaattgtg 30723969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 41796424 - 41796245
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41796424 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtactgtcacttgcccgagaggg 41796325  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41796324 ttttgaggcaatacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 41796245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 31424412 - 31424591
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31424412 gaggagcacagagagattcaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 31424511  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  31424512 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttaaggacctccccccgccttccattgtg 31424591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 49093093 - 49093272
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49093093 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 49093192  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  49093193 ttttgaggcagtacggatacgtgcagaccatccctagacatccgactgatgttagggacctccccccgccttccattgtg 49093272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 40355802 - 40355623
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  | ||||||||||||||||||||||||||||||||||    
T  40355802 gaggagcacagagagatccaggacttcgaggaggttttatggtattctgggtggattatgtgtagtgtccgtagggtgtaccgtcacttgcccgagaggg 40355703  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||    
T  40355702 ttttgaggcagtacggatacgtccagaccatccctagacatccgactgctgttagggacctcccaccgtcttccattgtg 40355623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 21018977 - 21018801
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||| ||||||| ||    
T  21018977 gaggagcatagagagatccaggacttagaggaggttttctggtattctggctggattatgtgcggtgtctgtagcgtgtaccgtcactttcccgagaagg 21018878  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccatt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21018877 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgcctttcatt 21018801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 44677366 - 44677190
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  44677366 gagcacagggagatccaggactttgaggaggttttttggtattctggctggattatgtgcggtgtccgtagggtgtaccgtcacttgcccaagagggttt 44677267  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||||||||||||| | |||||||||||||| |||| ||||||||||    ||||||||||||||| |||||||    
T  44677266 tgaggcagtacggatacatccagaccatccccaggcatctgactgatgttgtaaacctcccaccgccttacattgtg 44677190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 50277829 - 50277978
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  50277829 gagcacagagagatccaggattttgaggaggttttctggtattctggctggattatgtgcggtgtttgtagggtgtaccgtcacttgcccgagagggttt 50277928  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  50277929 tgaggcagtacggatacgtccagaccgtccccagacatccgacggatgtt 50277978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 37016967 - 37016791
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    ||||| || ||||||||| |||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||    
T  37016967 gagcatagggagatccagaactttgaggaggttttctggtattctggttggattatgtgtggtgttcgtagggtgtaccgtcacttgcccgagagggttt 37016868  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||| |||||||||||  |||||||||||||||||| ||| ||||||   ||||||||| |||||| |||||||    
T  37016867 tgaggcaatacggatacgtcaagaccatccccagacatctgacggatgttgtagacctcccatcgccttacattgtg 37016791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 50196076 - 50196218
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||| | || |||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  50196076 gagcacagggagatccagaattttgaggaggttttctggtattcaggttggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagggttt 50196175  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgac 196  Q
    ||||||||||||||||||| ||| || ||||||||||| ||||    
T  50196176 tgaggcagtacggatacgttcaggccgtccccagacattcgac 50196218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 63 - 196
Target Start/End: Original strand, 8109835 - 8109968
Alignment:
Q  63 gagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagt 162  Q
    |||||||| || || |||||||||||||||||||| || ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||    
T  8109835 gagatccaagattttgaggaggttttctggtattcaggctggattatgtgtggtgttcgtagggtgtaccgtcacttgcccgagagggttttgaggcagt 8109934  T
Q  163 acggatacgtgcagaccatccccagacatccgac 196  Q
    |||||||||| |||||| ||||||||||||||||    
T  8109935 acggatacgtccagaccgtccccagacatccgac 8109968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 50021065 - 50020919
Alignment:
Q  57 cacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttga 156  Q
    ||||| ||||| || || || |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  50021065 cacagggagatacatgattttgaggaggttttctggtattcaggttggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagggttttga 50020966  T
Q  157 ggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||| ||||| || ||| |||||||||||||||| ||||||    
T  50020965 ggcagtacgggtacgtccataccgtccccagacatccgacggatgtt 50020919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 51685810 - 51685959
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    ||||||||||||||| | || || |||||||||||||||||||| || |||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  51685810 gagcacagagagatctaagattttgaggaggttttctggtattcaggctggattatatgcggtgttcgtagggtctaccgtcacttgcccgagagggttt 51685909  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||| ||||||| |||||| |||| ||||||||||| ||||||    
T  51685910 tgaggcagtacagatacgtccagaccgtccctagacatccgacggatgtt 51685959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 63 - 203
Target Start/End: Original strand, 50904047 - 50904187
Alignment:
Q  63 gagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagt 162  Q
    ||||||||||| || ||||||| ||| |||| ||| || ||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||||    
T  50904047 gagatccaggattttgaggagggtttttggttttcaggttggatcatgtgcggtgttcgtagggtgtaccgtcacttgtccgagagggttttgaggcagt 50904146  T
Q  163 acggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    || ||||||| |||||| ||||||| |||||||| ||||||    
T  50904147 acagatacgtccagaccgtccccaggcatccgacggatgtt 50904187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 71624 - 71750
Alignment:
Q  66 atccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacg 165  Q
    |||||||  ||||||||||| || |||||||| || |||||||||||||| |  |||||||||| |||||||||| ||||||||||||||||||||||||    
T  71624 atccaggctttcgaggaggtattatggtattcaggctggattatgtgcggtgatcgtagggtgttccgtcacttggccgagagggttttgaggcagtacg 71723  T
Q  166 gatacgtgcagaccatccccagacatc 192  Q
    ||||||| ||||||||||| |||||||    
T  71724 gatacgtccagaccatccctagacatc 71750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 10730352 - 10730227
Alignment:
Q  78 gaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcaga 177  Q
    |||||||||||||||||||  || |||||| ||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  10730352 gaggaggttttctggtatttaggctggattttgtgcggtgttcgtagagtgtaccgtcacttgcctgagagggttttgaggcagtacagatacgtccaga 10730253  T
Q  178 ccatccccagacatccgactgatgtt 203  Q
    ||||||| ||| ||||||| ||||||    
T  10730252 ccatccctagaaatccgacggatgtt 10730227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 10944121 - 10943996
Alignment:
Q  78 gaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcaga 177  Q
    |||||||||||||||||||  || |||||| ||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  10944121 gaggaggttttctggtatttaggctggattttgtgcggtgttcgtagagtgtaccgtcacttgcctgagagggttttgaggcagtacagatacgtccaga 10944022  T
Q  178 ccatccccagacatccgactgatgtt 203  Q
    ||||||| ||| ||||||| ||||||    
T  10944021 ccatccctagaaatccgacggatgtt 10943996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 13624894 - 13624766
Alignment:
Q  75 ttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgc 174  Q
    |||||||| || ||||||||||| || |||||||||||||| |  ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |    
T  13624894 ttcgaggaagtattctggtattcaggttggattatgtgcggtgatcgtagggcgtaccgtcacttgcccaagagggttttgaggcagtacggatacgtcc 13624795  T
Q  175 agaccatccccagacatccgactgatgtt 203  Q
    ||||| |||| ||||||||| | ||||||    
T  13624794 agaccgtccctagacatccgtcggatgtt 13624766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 14317284 - 14317433
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||| ||||  || |||||||||||||||||||| || |||||||||||||| || |||||||| |||| ||||||||||||||||||||    
T  14317284 gagcacagggagattcagggttttgaggaggttttctggtattcaggctggattatgtgcggtgttcgtagggtataccatcacttgcccgagagggttt 14317383  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||| |||| ||||||| || ||  |||| || |||||||| ||||||    
T  14317384 tgaggcggtacagatacgtccaaactgtccctagtcatccgacggatgtt 14317433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 46438743 - 46438892
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||  ||||||||||  || |||||| | |||| |||||| || |||||||| ||||| || ||||||||||||||| ||||||||||||||||||    
T  46438743 gagcacaaggagatccagggatttgaggagatattctagtattcaggctggattatttgcggtgttcgtagggtgtaccgttacttgcccgagagggttt 46438842  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||| ||||||| ||||   |||| ||||||||||| ||||||    
T  46438843 tgaggcagtacagatacgtccagagggtccctagacatccgacggatgtt 46438892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 41931334 - 41931209
Alignment:
Q  78 gaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcaga 177  Q
    |||||||||||||||||||  ||||||||||||||||| || ||||| ||||||||| |  | ||| ||||||||||||||||| |||||||||| || |    
T  41931334 gaggaggttttctggtattaaggatggattatgtgcggtgttcgtagagtgtaccgttatctacccaagagggttttgaggcagcacggatacgtccaaa 41931235  T
Q  178 ccatccccagacatccgactgatgtt 203  Q
    |  |||| ||||||||||||||||||    
T  41931234 cagtccctagacatccgactgatgtt 41931209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 21535597 - 21535449
Alignment:
Q  55 agcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggtttt 154  Q
    ||||||| ||||||||||  || |||||| |||| || ||||| || | | |||||||| | ||   ||||||||| ||||||||||| ||||| |||||    
T  21535597 agcacagggagatccagggttttgaggagattttatgttattcaggctaggttatgtgcagtgttattagggtgtatcgtcacttgcctgagagagtttt 21535498  T
Q  155 gaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    | ||| ||||||||| ||  ||||| |||| ||||||||||| ||||||    
T  21535497 gcggctgtacggatatgtcgagaccgtccctagacatccgacggatgtt 21535449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 30706657 - 30706728
Alignment:
Q  132 cgtcacttgcccgagagggttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||| |||||||| ||||||||||||| ||||||  |||| ||||| ||||||||||| ||||||    
T  30706657 cgtcacttgcctgagagggtgttgaggcagtacgaatacgtctagacgatccctagacatccgacggatgtt 30706728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 12891586 - 12891703
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||  || |||||| ||||||||||||| || ||| |||||||||| ||  ||   ||||| ||||||||||| ||||| |||     
T  12891586 gagcacagggagatccagggttttgaggagattttctggtattcaggctgggttatgtgcggtgt-tgttaagtgtatcgtcacttgcctgagagagtta 12891684  T
Q  154 tgaggcagtacggatacgt 172  Q
     | ||||||||||||||||    
T  12891685 ggcggcagtacggatacgt 12891703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 40887012 - 40886874
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    ||||| ||||||||||| || || |||||| |||| |||||||| || |||||||||||||| ||    |  ||||| |||||||| |  ||||| |||     
T  40887012 gagcatagagagatccaagattttgaggagattttatggtattcaggctggattatgtgcggtgttgacaacgtgtatcgtcactttcttgagagagtta 40886913  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatc 192  Q
     | ||||||| ||||||||||||| | |||| |||||||    
T  40886912 ggcggcagtaaggatacgtgcagaacgtccctagacatc 40886874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 26878388 - 26878567
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26878388 gaggagcacagagagatccatgacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 26878487  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26878488 ttttgagacagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgccttccattgtg 26878567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 3729729 - 3729549
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3729729 gaggagcacagagagatccaagacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 3729630  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccg-ccttccattgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  3729629 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctccccccgcccttccattgtg 3729549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 13637385 - 13637206
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13637385 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccatcacttgcccgagaggg 13637286  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  13637285 ttttgaggcagtacagatacgtgcagaccatccccagacatccgactgatgttagggagctccccccgccttccattgtg 13637206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 19158692 - 19158844
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  19158692 gaggagcacagagagatccaggacttcgaggaggttttctggtattctgggtggattatgtgcggtgtccgtagggtgtaccgtcactttcccgagaggg 19158791  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  19158792 ttttgaggcagtacggatacgtgcagaccatccccaaacatcccacggatgtt 19158844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 95474 - 95295
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  95474 gaggagcacagggagatccaggactttgaggaggttttctggtattctggctggattatgtgtggtgtccgtagggtgtaccgtcacttgcccgataggg 95375  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||   |||||||||||||||| |||||||    
T  95374 ttttgaggcagtacggatatttccagaccatccccagacatccgactgatgttgtagacctcccaccgccttacattgtg 95295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 31781039 - 31780860
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||| |||||||||||||| |||| | |||||||||||||||| |||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  31781039 gaggagcacagggagatccaggactttgaggggattttctggtattctggttggattatgtgcggtgtctgtagggtgtaccatcacttgcccgagaggg 31780940  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgttagggacctcccaccgccttccattgtg 230  Q
    || ||||||||||||||||||| ||||||||||||| ||||||||||||||||   |||||||||||||||| |||||||    
T  31780939 ttatgaggcagtacggatacgtccagaccatccccaaacatccgactgatgttgtagacctcccaccgccttacattgtg 31780860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 22526674 - 22526826
Alignment:
Q  51 gaggagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagaggg 150  Q
    ||||||||||  |||||| ||||||| ||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22526674 gaggagcacatggagatctaggactttgaggaggttttctagtactctggctggattatgtgcggtgtccgtagggtgtaccgtcacttgcccgagaggg 22526773  T
Q  151 ttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  22526774 ttttgaggcagtacggatacgtccagaccgtccccagacatccgaccgatgtt 22526826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 19522653 - 19522504
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||||||||| |||||  | ||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  19522653 gagcacagagagatacaggatattgaggaggttttctggtattctggctggattatgtgcggtgttcgtagggtgtatcgtcacttgcccgagagggttt 19522554  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||||||||||| |||||| ||||||||||| |||| ||||||    
T  19522553 tgaggcagtacggatacgtccagaccgtccccagacattcgacggatgtt 19522504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 50341525 - 50341407
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  50341525 gagcacagggagatccaggatttagaggaggttttctggtattcaggctggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagggttt 50341426  T
Q  154 tgaggcagtacggatacgt 172  Q
    |||||||||||||||||||    
T  50341425 tgaggcagtacggatacgt 50341407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 47505016 - 47505164
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| || ||||||||||||||||| || || |||||||||||||| || ||| ||||||||||||||||||||||||||||||    
T  47505016 gagcacagggagatccaggattttgaggaggttttctggtaatcaggctggattatgtgcggtgttcgt-gggtgtaccgtcacttgcccgagagggttt 47505114  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||  |||||| |||||  |||||||||||||||| ||||||    
T  47505115 tgaggcagtacaaatacgtccagactgtccccagacatccgacggatgtt 47505164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 52804570 - 52804691
Alignment:
Q  82 aggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcagaccat 181  Q
    ||||||||||||||| ||  ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  52804570 aggttttctggtattatgcttggattatgtgaggtgttcgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtccagaccgt 52804669  T
Q  182 ccccagacatccgactgatgtt 203  Q
    ||||||||||||||| ||||||    
T  52804670 ccccagacatccgacggatgtt 52804691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 11196537 - 11196679
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    ||||||| ||| |||||||| || ||||||||||| |||||||| || ||||||||||||||  | ||||||||||||||||||||| | |||||||| |    
T  11196537 gagcacaaagaaatccaggattttgaggaggttttttggtattcaggctggattatgtgcggtattcgtagggtgtaccgtcacttgtctgagagggtgt 11196636  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgac 196  Q
    ||||||||||||||||||| ||||  ||||| |||||||||||    
T  11196637 tgaggcagtacggatacgtccagatgatccctagacatccgac 11196679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 21143654 - 21143763
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| |||||| |||| || | | ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  21143654 gagcacagggagatctaggattttgtgaaggttttctggtattctggctggattatgtgcggtgttcgtagggtgtaccgtcacttgcccgagagggttt 21143753  T
Q  154 tgaggcagta 163  Q
    ||||||||||    
T  21143754 tgaggcagta 21143763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 45828251 - 45828400
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||| || | |||||| ||||||||||||||| |||||||||    
T  45828251 gagcacagggagatccaggattttgaggaggttttctggtattcaggctggattatgtgcggtgttcatagggtataccgtcacttgcccaagagggttt 45828350  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||| |||||  |||||| || | | |||| |||||||| || ||||||    
T  45828351 tgaggtagtacaaatacgttcatagcgtccctagacatcctacagatgtt 45828400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 47660547 - 47660670
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||  || |||||| | ||||||||||| || |||||||| ||||| ||  ||||||||||||||||||| |||||||||||||    
T  47660547 gagcacagggagatccagggttttgaggagatattctggtattcaggctggattatctgcggtgtttgtagggtgtaccgtcacttacccgagagggttt 47660646  T
Q  154 tgaggcagtacggatacgtgcaga 177  Q
    ||||| ||||||||||||| ||||    
T  47660647 tgaggaagtacggatacgtccaga 47660670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 35256622 - 35256520
Alignment:
Q  75 ttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgc 174  Q
    ||||||||||| ||||||||||| || |||||||||||||| |  ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |    
T  35256622 ttcgaggaggtattctggtattcaggctggattatgtgcggtgatcgtagggtgtaccgtcacttgcctgagagagttttgagacagtacggatacgttc 35256523  T
Q  175 aga 177  Q
    |||    
T  35256522 aga 35256520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 49855377 - 49855261
Alignment:
Q  75 ttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgc 174  Q
    ||||||| ||| |||||||||||  | |||||||||||||| |  ||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||| |    
T  49855377 ttcgagggggtattctggtattcaagttggattatgtgcggtgatcgtagggtgtaccgtgacttgcccgagaggg-tttgaggcactacagatacgtcc 49855279  T
Q  175 agaccatccccagacatc 192  Q
    ||||| |||| |||||||    
T  49855278 agaccgtccctagacatc 49855261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 23273632 - 23273541
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccga 145  Q
    |||||||| ||||||||||| || ||||||||||| |||||||| || |||||||| ||||| || |||||||| |||||||||||||||||    
T  23273632 gagcacagggagatccaggattttgaggaggttttttggtattccggctggattatatgcggtgttcgtagggtctaccgtcacttgcccga 23273541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 38120475 - 38120392
Alignment:
Q  120 cgtagggtgtaccgtcacttgcccgagagggttttgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| | ||||| ||| ||||||    
T  38120475 cgtagggtgtaccgtcacttgcctgagagggtgttgaggcagtacggatacgtccagacgatccctaaacatctgacggatgtt 38120392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 12025 - 12174
Alignment:
Q  54 gagcacagagagatccaggacttcgaggaggttttctggtattctggatggattatgtgcggcgtccgtagggtgtaccgtcacttgcccgagagggttt 153  Q
    |||||||| ||||||||||  || ||||| || ||||||||||| || |||||||||||||| |  ||||||||||||||||| |||| |||||||||||    
T  12025 gagcacagggagatccaggcttttgaggacgtattctggtattcaggctggattatgtgcggtgatcgtagggtgtaccgtcatttgctcgagagggttt 12124  T
Q  154 tgaggcagtacggatacgtgcagaccatccccagacatccgactgatgtt 203  Q
    |||||||||||| |||||| | ||||||||| ||||||||| | ||||||    
T  12125 tgaggcagtacgaatacgtcctgaccatccctagacatccgtcggatgtt 12174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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