View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_25 (Length: 293)
Name: NF0627_low_25
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 65 - 287
Target Start/End: Complemental strand, 734739 - 734517
Alignment:
| Q |
65 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
734739 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
734640 |
T |
|
| Q |
165 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttcagaagaag |
264 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
734639 |
aggtgttgaagaagtgatagctgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaag |
734540 |
T |
|
| Q |
265 |
agtcacaggaaggttgagcttct |
287 |
Q |
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||||| ||||||||||||||||| |
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| T |
734539 |
agtcataggaaggttgagcttct |
734517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 65 - 287
Target Start/End: Complemental strand, 45391131 - 45390909
Alignment:
| Q |
65 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45391131 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
45391032 |
T |
|
| Q |
165 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttcagaagaag |
264 |
Q |
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| T |
45391031 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaag |
45390932 |
T |
|
| Q |
265 |
agtcacaggaaggttgagcttct |
287 |
Q |
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||||| || |||||||||||||| |
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| T |
45390931 |
agtcatagaaaggttgagcttct |
45390909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 82 - 287
Target Start/End: Complemental strand, 45386745 - 45386540
Alignment:
| Q |
82 |
cctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtga |
181 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45386745 |
cctccagcagagattttgctgagagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtga |
45386646 |
T |
|
| Q |
182 |
taactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttcagaagaagagtcacaggaaggttga |
281 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45386645 |
taactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttcagaagaagagtcacaggaaggttga |
45386546 |
T |
|
| Q |
282 |
gcttct |
287 |
Q |
| |
|
|||||| |
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|
| T |
45386545 |
gcttct |
45386540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 287
Target Start/End: Complemental strand, 40578088 - 40577958
Alignment:
| Q |
157 |
gattttccaggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttc |
256 |
Q |
| |
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|||||| |||| |||||||| ||| | ||||||||||| ||||| | ||| |||| |||||||| |||||||| |||||||||||| | || || |||| |
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| T |
40578088 |
gatttttcaggggttgaagatgtggttactgattgcaaatctcacaaggttattgttaaaggagaaaaagcggatccattgaaggttcttgaaagagttc |
40577989 |
T |
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| Q |
257 |
agaagaagagtcacaggaaggttgagcttct |
287 |
Q |
| |
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||| ||||||||| || | ||||||||||| |
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| T |
40577988 |
agaggaagagtcatagacaagttgagcttct |
40577958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 40578235 - 40578165
Alignment:
| Q |
98 |
tgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggt |
168 |
Q |
| |
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|||| ||||| ||||||||||||||| | |||||||| ||||||||||| || | |||| |||||||||| |
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| T |
40578235 |
tgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
40578165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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