View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0627_low_26 (Length: 287)

Name: NF0627_low_26
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0627_low_26
NF0627_low_26
[»] chr5 (2 HSPs)
chr5 (51-261)||(14004244-14004451)
chr5 (105-174)||(16230784-16230853)
[»] chr2 (3 HSPs)
chr2 (107-175)||(33657401-33657469)
chr2 (105-172)||(10231872-10231939)
chr2 (135-168)||(2377913-2377946)
[»] chr6 (1 HSPs)
chr6 (114-171)||(33817334-33817391)
[»] chr1 (4 HSPs)
chr1 (102-168)||(45112052-45112118)
chr1 (112-169)||(15867618-15867675)
chr1 (142-174)||(15920248-15920280)
chr1 (105-133)||(46189367-46189395)
[»] chr8 (1 HSPs)
chr8 (105-141)||(18103089-18103125)
[»] chr4 (2 HSPs)
chr4 (117-170)||(35656474-35656527)
chr4 (115-168)||(45677534-45677587)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 51 - 261
Target Start/End: Complemental strand, 14004451 - 14004244
Alignment:
Q  51 cactagtttaaaaagctttacaatatcattaaattacaaccaattaatttaataattttaaaaatagttatgattaaagtcaactattttaaatgatctc 150  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14004451 cactagtttaaaaaactttacaatatcattaaattacaaccaattaatttaataattttaaaaatagttatgattaaagtcaattattttaaatgatctc 14004352  T
Q  151 acgattatgattgattgacagtgtgtaaaacatatttactctttcaactactctccttctgcaacacccataacttcagccacccctccaccccgtgctc 250  Q
    |||||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004351 acgattatgattgattgacagtgtataaaacatatttactctttca---actctccttctgcaacacccataacttcagccacccctccaccccgtgctc 14004255  T
Q  251 atgacaccaat 261  Q
    |||||||||||    
T  14004254 atgacaccaat 14004244  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 16230784 - 16230853
Alignment:
Q  105 attttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacagtgt 174  Q
    |||||| || |||||||||||||||||||  |||||||||||||   |||||| ||| ||||||||||||    
T  16230784 attttagaagtagttatgattaaagtcaaacattttaaatgatcagtcgattacgatcgattgacagtgt 16230853  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 33657469 - 33657401
Alignment:
Q  107 tttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacagtgtg 175  Q
    |||||||||||||||| |||||||||| |||||| |||||| | ||| |||||||||||||| ||||||    
T  33657469 tttaaaaatagttatggttaaagtcaaatattttcaatgatttgacggttatgattgattgatagtgtg 33657401  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 10231872 - 10231939
Alignment:
Q  105 attttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacagt 172  Q
    |||||| ||||||||||||| |||||||| |  ||| |||||||| | |||| |||||||||||||||    
T  10231872 attttagaaatagttatgataaaagtcaaatgattttaatgatctgatgattgtgattgattgacagt 10231939  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 2377913 - 2377946
Alignment:
Q  135 tattttaaatgatctcacgattatgattgattga 168  Q
    |||||| |||||||||||||||||||||||||||    
T  2377913 tatttttaatgatctcacgattatgattgattga 2377946  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 33817334 - 33817391
Alignment:
Q  114 atagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacag 171  Q
    |||| ||||||||||||||  |||||| |||||||| |||||||||||||||||||||    
T  33817334 atagatatgattaaagtcatgtatttttaatgatctaacgattatgattgattgacag 33817391  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 45112118 - 45112052
Alignment:
Q  102 ataattttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattga 168  Q
    |||| ||||||||||||||| |||||||||||  ||||||||  |||||| |||||||||| |||||    
T  45112118 ataactttaaaaatagttataattaaagtcaaacattttaaacaatctcatgattatgatttattga 45112052  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 15867618 - 15867675
Alignment:
Q  112 aaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgac 169  Q
    ||||||||||||||||||||||  | ||| |||||| | |||||||||||||||||||    
T  15867618 aaatagttatgattaaagtcaaacagttttaatgatatgacgattatgattgattgac 15867675  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 15920248 - 15920280
Alignment:
Q  142 aatgatctcacgattatgattgattgacagtgt 174  Q
    |||||||||||||||||||||||||||| ||||    
T  15920248 aatgatctcacgattatgattgattgacggtgt 15920280  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 46189367 - 46189395
Alignment:
Q  105 attttaaaaatagttatgattaaagtcaa 133  Q
    |||||||||||||||||||||||||||||    
T  46189367 attttaaaaatagttatgattaaagtcaa 46189395  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 18103125 - 18103089
Alignment:
Q  105 attttaaaaatagttatgattaaagtcaactatttta 141  Q
    |||||||||||||||||| ||||||||||||||||||    
T  18103125 attttaaaaatagttatggttaaagtcaactatttta 18103089  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 35656474 - 35656527
Alignment:
Q  117 gttatgattaaagtcaactattttaaatgatctcacgattatgattgattgaca 170  Q
    ||||||||||| ||||| |||||| |||||| | ||||||||||||||| ||||    
T  35656474 gttatgattaatgtcaaatatttttaatgatgtgacgattatgattgatcgaca 35656527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 45677534 - 45677587
Alignment:
Q  115 tagttatgattaaagtcaactattttaaatgatctcacgattatgattgattga 168  Q
    ||||||||| ||||||||| |||||| |||||| ||||  ||||||||||||||    
T  45677534 tagttatgaataaagtcaaatatttttaatgatttcacagttatgattgattga 45677587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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