View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0627_low_27 (Length: 281)

Name: NF0627_low_27
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0627_low_27
NF0627_low_27
[»] chr1 (3 HSPs)
chr1 (40-245)||(36397803-36398009)
chr1 (74-240)||(2943316-2943481)
chr1 (46-95)||(26555336-26555385)
[»] chr7 (2 HSPs)
chr7 (44-228)||(34869768-34869950)
chr7 (40-164)||(7410827-7410951)
[»] chr8 (2 HSPs)
chr8 (49-119)||(1386491-1386561)
chr8 (181-230)||(1386374-1386423)
[»] chr5 (1 HSPs)
chr5 (49-119)||(16125795-16125865)
[»] chr3 (1 HSPs)
chr3 (67-145)||(1762718-1762796)
[»] chr2 (1 HSPs)
chr2 (51-127)||(8387737-8387813)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 36398009 - 36397803
Alignment:
Q  40 cttgagttgcgttctttccaaataacccaaagacaggccaaccaaacaacttgaaa-gcaaccacggatgttctttttgaatgcatgcatatcaaaaaac 138  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||  |||||||||||||||||||||||||| |||||||||     
T  36398009 cttgagttgcgttctttccaaataacccaaagagaggccaaccaaacaacttaaaaagcaagtacggatgttctttttgaatgcatgcacatcaaaaaat 36397910  T
Q  139 tgttgcgagtgacacctaatatccgaagtaacaactgttaagatgcccaatcaacgatgaatgagataccaaatactaccaaagaagtcacactattaat 238  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  36397909 tgttgcgcgtgacacctaatatctgaagtaacaactgttaagatgcccaatcaacgatgaacaagatatcaaatactaccaaagaagtcacactattaat 36397810  T
Q  239 ctctgct 245  Q
    || ||||    
T  36397809 ctttgct 36397803  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 2943316 - 2943481
Alignment:
Q  74 aggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaactgttgcgagtgacacctaatatccgaagtaacaac 173  Q
    |||||||||||||||||||||||||| |  | |||||||||||||||||||||   |||||||||||||||  |||| || ||| |||||||||||||||    
T  2943316 aggccaaccaaacaacttgaaagcaagcgtgaatgttctttttgaatgcatgcgcgtcaaaaaactgttgcacgtga-acataacatccgaagtaacaac 2943414  T
Q  174 tgttaagatgcccaatcaacgatgaatgagataccaaatactaccaaagaagtcacactattaatct 240  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  2943415 tgttaagatacccaatcaacaatgaaggagataccaaatactaccaaagaagtcgcactattaatct 2943481  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 26555336 - 26555385
Alignment:
Q  46 ttgcgttctttccaaataacccaaagacaggccaaccaaacaacttgaaa 95  Q
    |||| ||||||| |||| |||||||||||| |||||||||||||||||||    
T  26555336 ttgctttctttcaaaatgacccaaagacagaccaaccaaacaacttgaaa 26555385  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 228
Target Start/End: Complemental strand, 34869950 - 34869768
Alignment:
Q  44 agttgcgttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaactgttg 143  Q
    |||||| ||||||| |||| || |||||| || ||||||||| ||||||||||||  | || ||||||||| |||| ||||||    ||||||| ||||     
T  34869950 agttgcattctttctaaatgactcaaagatagaccaaccaaataacttgaaagcaggcgcgaatgttctttctgaaagcatgcgc--caaaaaagtgttt 34869853  T
Q  144 cgagtgacacctaatatccgaagtaacaactgttaagatgcccaatcaacgatgaatgagataccaaatactaccaaagaagtca 228  Q
    || |||||||| |||||||||||||||||  ||| ||||| |||| || |||||||  ||||| |||| ||||||||||||||||    
T  34869852 cgtgtgacacccaatatccgaagtaacaatcgttgagatgtccaaccatcgatgaacaagatatcaaacactaccaaagaagtca 34869768  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 7410951 - 7410827
Alignment:
Q  40 cttgagttgcgttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaact 139  Q
    ||||||||| ||||||||||||| | ||||||||| |||||||||| ||||||||||||| | |  |||||||||||||| ||||||    |||||||||    
T  7410951 cttgagttgggttctttccaaatgatccaaagacatgccaaccaaataacttgaaagcaagctcaaatgttctttttgaaagcatgcgcgacaaaaaact 7410852  T
Q  140 gttgcgagtgacacctaatatccga 164  Q
    |||| | |||||  || ||||||||    
T  7410851 gttgtgtgtgacttctcatatccga 7410827  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 1386561 - 1386491
Alignment:
Q  49 cgttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaa 119  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| |  | ||||||||||||||    
T  1386561 cgttcttttcaaatgacccaaagacaggccaaccaaacaacttgaaagcaagcgtgaatgttctttttgaa 1386491  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 1386423 - 1386374
Alignment:
Q  181 atgcccaatcaacgatgaatgagataccaaatactaccaaagaagtcaca 230  Q
    |||||||||||| ||| || ||||| |||||||| |||||||||||||||    
T  1386423 atgcccaatcaatgataaaggagatgccaaatacgaccaaagaagtcaca 1386374  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 16125795 - 16125865
Alignment:
Q  49 cgttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaa 119  Q
    ||||||||| |||| || ||||||||||||||||||||||| | ||||||| |||  |||||||| |||||    
T  16125795 cgttctttcgaaatgacacaaagacaggccaaccaaacaacctaaaagcaagcacaaatgttcttattgaa 16125865  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 1762796 - 1762718
Alignment:
Q  67 caaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgcatatcaaaaaactgttgcg 145  Q
    |||||| ||| |||||||||||||| ||||||| | |  ||||||||||||||||||||||   |||||| ||||||||    
T  1762796 caaagaaaggtcaaccaaacaacttcaaagcaagcgcaaatgttctttttgaatgcatgcacgccaaaaagctgttgcg 1762718  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 8387813 - 8387737
Alignment:
Q  51 ttctttccaaataacccaaagacaggccaaccaaacaacttgaaagcaaccacggatgttctttttgaatgcatgca 127  Q
    |||||||||| | ||||||||||||| |||||| ||||| ||| ||||   ||| |||||||||||||| |||||||    
T  8387813 ttctttccaattgacccaaagacaggacaaccacacaacctgagagcatagacgaatgttctttttgaaagcatgca 8387737  T

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