View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0627_low_29 (Length: 273)
Name: NF0627_low_29
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 4765338 - 4765536
Alignment:
| Q |
3 |
ataaataaagttttacaaacagtgtaaatccataatattctatagcaaaaagtgagttatggaatgtcagaaaaaatattcttaatgaagagaaacaaca |
102 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4765338 |
ataaataatgttttacaaacagtgtgaatccataatatggtatagcaaaaagtgagttatggaatgtcagaaaaaatattcttaatgaagagaaaaaaca |
4765437 |
T |
|
| Q |
103 |
ttttaggtagggaatatacatctaacacatgacaacctttgagttgtcagggttgttattgaggtacatatgacaccatttatgcttctggtttatttc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4765438 |
ttttaggtagggaatatacatctaacacatgacaacctttgagttgtcagggttgttattgaggtacatatgacaccatttatgcttctggtttatttc |
4765536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 35780851 - 35780768
Alignment:
| Q |
50 |
aaaagtgagttatggaatgtcagaaaaaat-attcttaatgaagagaaacaacattttaggtagggaatatacatctaacacatgac |
135 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||| || ||||| |||| |||| |||| |||||||||||| |||||||||||||||| |
|
|
| T |
35780851 |
aaaattgagtaatggaatgtcaaaaaaaattatacttaa---agagcaacacaatttaaggtagggaatacacatctaacacatgac |
35780768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3075 times since January 2019
Visitors: 4027