View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_3 (Length: 498)
Name: NF0627_low_3
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 6 - 399
Target Start/End: Original strand, 22362796 - 22363189
Alignment:
| Q |
6 |
ctccaacaatatagaaaggctacataaaattgaagaatgttagaaaaacatggtaacaagttaacataaagtggataatatgtaagtgaaacatgtgaaa |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
22362796 |
ctccaccaatatagaaaggctacataaaattgaagaatgttagaaaaacatggtaacaagataacataaagtggataatatgtgagtgaaacatgtgaaa |
22362895 |
T |
|
| Q |
106 |
ttatagatgcatatatgtacctgaaaagtatcacctaaacttgtagaggggtcaaaactgcatatgacatgaagtctctgaccttcacctatattcacta |
205 |
Q |
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| T |
22362896 |
ttatagaagcatatatgtacctgaaaagtatcacctaaacttgtagaggggtcaaaactgcatatgacatgaagtctctgaccttcacctatattcacta |
22362995 |
T |
|
| Q |
206 |
aataaaatacagtacctgctggaattacatacaaatcccccgtctttattctcctttcctctagttcatctccatatatgaatcccaactttgctacccc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362996 |
aataaaatacagtacctgctggaattacatacaaatcccctgtctttattctcctttcctctagttcatctccatatatgaatcccaactttgctacccc |
22363095 |
T |
|
| Q |
306 |
tgcatccaagttgaaaatttcactctaaatttctctaatgacttgatgttcacttgttgcttcaaggcaatagaagctttaaaattgtgatgtt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22363096 |
tgcatccaagttgaaaatttcactctaaatttctctaatgacttgatgttcacttgttgcttcaaggcaatagaagctttaaaattgtgatgtt |
22363189 |
T |
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