View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_31 (Length: 267)
Name: NF0627_low_31
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 100 - 242
Target Start/End: Original strand, 11115481 - 11115623
Alignment:
| Q |
100 |
aattattataaatctaatctttgagtttttgcacaatcagtggcaatgggaagaaacatgggacaaccatatggaatcgtccaatgcttgtgaaaggacc |
199 |
Q |
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| T |
11115481 |
aattattataaatctaatctttgagtttttgcacaatcagtggcaatgggaagaaacatgggacaaccatatggaatcgtccaatgcttgtgaaaggacc |
11115580 |
T |
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| Q |
200 |
tcttggaattgtttctattacagaaatatcattcttgcctatg |
242 |
Q |
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| T |
11115581 |
tcttggaattgtttctattacagaaatagcattcttgcttatg |
11115623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 11103652 - 11103764
Alignment:
| Q |
125 |
tttttgcacaatcagtggcaatgggaagaaacatgggacaaccatatggaatcgtccaatgcttgtgaaaggacctcttggaattgtttctattacagaa |
224 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
11103652 |
tttttgcacaatcagtcgcaatgggaagaaacatgggacaaccatatggaaccgtccaatgcttgtaaaaggacctcttggaattgtttctatcacagaa |
11103751 |
T |
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| Q |
225 |
atatcattcttgc |
237 |
Q |
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| T |
11103752 |
atagcattcttgc |
11103764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 11590090 - 11590202
Alignment:
| Q |
125 |
tttttgcacaatcagtggcaatgggaagaaacatgggacaaccatatggaatcgtccaatgcttgtgaaaggacctcttggaattgtttctattacagaa |
224 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
11590090 |
tttttgtacaatcagtcgcaatgggaagaaacatgggacaaccatatggaaccgtccaatgcttgtaaaaggacctcttggaattgtttctatcacagag |
11590189 |
T |
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| Q |
225 |
atatcattcttgc |
237 |
Q |
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||| |||| |||| |
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| T |
11590190 |
atagcatttttgc |
11590202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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