View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_33 (Length: 263)
Name: NF0627_low_33
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 39950937 - 39950818
Alignment:
| Q |
135 |
acgatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaag |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39950937 |
acgatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaag |
39950838 |
T |
|
| Q |
235 |
aaggttatgctgatgttcat |
254 |
Q |
| |
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|||||||||||||||||||| |
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| T |
39950837 |
aaggttatgctgatgttcat |
39950818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 39951348 - 39951238
Alignment:
| Q |
22 |
gaagataccccctccaggatcagctatgaatgcaaccaaaactcagtatcgtcagataagaaatacgcatcaattcttactgtaaaagccacagctaaaa |
121 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
39951348 |
gaagataccacctccaggatcagctatgactgcaaccaaaactcagtatcgtcagataagaaatgcgcatcaagtcttactgtaaaagccacagctaaaa |
39951249 |
T |
|
| Q |
122 |
acaaaagctat |
132 |
Q |
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||||||||||| |
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| T |
39951248 |
acaaaagctat |
39951238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 137 - 254
Target Start/End: Complemental strand, 46402298 - 46402181
Alignment:
| Q |
137 |
gatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaagaa |
236 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46402298 |
gatattgcaacggaaggaaactctataccactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaaggagaa |
46402199 |
T |
|
| Q |
237 |
ggttatgctgatgttcat |
254 |
Q |
| |
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|||||| |||||| |||| |
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| T |
46402198 |
ggttatactgatgctcat |
46402181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 46402718 - 46402616
Alignment:
| Q |
26 |
ataccccctccaggatcagctatgaatgcaaccaaaactcagtatcgtcagataagaaatacgcatcaattcttactgtaaaagccacagctaaaaacaa |
125 |
Q |
| |
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||||| ||||| ||||||||||||| |||||||||||||||||||| ||| ||||| || ||||||| ||||| |||||||||||||| ||||| | |
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| T |
46402718 |
ataccacctcctggatcagctatgactgcaaccaaaactcagtatcatcacataagcaagacgcatctggtctta--ataaaagccacagcttaaaacta |
46402621 |
T |
|
| Q |
126 |
aagct |
130 |
Q |
| |
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||||| |
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|
| T |
46402620 |
aagct |
46402616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 17113678 - 17113757
Alignment:
| Q |
165 |
tactctatgagtaacatctcaccagaagtctgaatggttcttcagccat--tttagcagccaaaccaagaagaaggttat |
242 |
Q |
| |
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||||| || ||||| |||||||||||| |||||||||||||| | ||| | ||||| |||||||||| |||||||||| |
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| T |
17113678 |
tactccattagtaatatctcaccagaaatctgaatggttctttaaacattatatagcacccaaaccaaggagaaggttat |
17113757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 27743521 - 27743626
Alignment:
| Q |
137 |
gatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaagaa |
236 |
Q |
| |
|
||||||||||| |||| |||||||| |||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
27743521 |
gatattgcaacagaagataactctattctactcgatcagtaacatctcaccagaagtatgaatggttcttcagacattttagcagccaaaccaaggagaa |
27743620 |
T |
|
| Q |
237 |
ggttat |
242 |
Q |
| |
|
|||||| |
|
|
| T |
27743621 |
ggttat |
27743626 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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