View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0627_low_34 (Length: 261)

Name: NF0627_low_34
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0627_low_34
NF0627_low_34
[»] chr2 (1 HSPs)
chr2 (32-261)||(4093773-4094002)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 4093773 - 4094002
Alignment:
Q  32 tttgccttggacagttggaggtgaaactaaatctttaatgttatcaacaaatagtgtttatgttactaagtggtattcactattcattttatggcaatga 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4093773 tttgccttggacagttggaggtgaaactaaatctttaatgttatcaacaaatagtgtttatgttactaagtggtattcactattcattttatggcaatga 4093872  T
Q  132 gcattatgtagaaccaaagttgagaaaggaataagaacacaacacctcagtatcaaggttagaggttgaaaatgaagagaaactagtggatggcatgtgc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4093873 gcattatgtagaaccaaagttgagaaaggaataagaacacaacacctcagtatcaaggttagaggttgaaaatgaagagaaactagtggatggcatgtgc 4093972  T
Q  232 aattgatatggtttcattgaagaggcttcc 261  Q
    ||||||||||||||||||||||| ||||||    
T  4093973 aattgatatggtttcattgaagaagcttcc 4094002  T

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