View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0627_low_38 (Length: 254)

Name: NF0627_low_38
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0627_low_38
NF0627_low_38
[»] chr5 (1 HSPs)
chr5 (1-223)||(7822459-7822688)
[»] chr2 (2 HSPs)
chr2 (15-105)||(17830184-17830274)
chr2 (96-206)||(17830361-17830471)
[»] chr3 (1 HSPs)
chr3 (12-59)||(44126018-44126065)
[»] scaffold0351 (3 HSPs)
scaffold0351 (16-63)||(16-63)
scaffold0351 (16-63)||(5506-5553)
scaffold0351 (16-63)||(13849-13896)
[»] scaffold0002 (1 HSPs)
scaffold0002 (16-63)||(114798-114845)
[»] chr4 (1 HSPs)
chr4 (21-65)||(56339721-56339765)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7822459 - 7822688
Alignment:
Q  1 caaaatcaaacaaggaattgtgataaaatatataattgtgatagagatgcacaaaataatcaaaacaacgtacacttggccaaaagttaaattttgtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7822459 caaaatcaaacaaggaattgtgataaaatatataattgtgatagagatgcacaaaataatcaaaacaacgtacacttggccaaaagttaaattttgtaga 7822558  T
Q  101 gatgtggaaagaaaagaagcc----ttaattcaaacttaagcaactcaaatagattgtatcaaacagtaataacatcaatcaatatg-aaaggaaaaata 195  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7822559 gatgtggaaagaaaagaagccttaattaattcaaacttaagcaactcaaatagattgtatcaaacagtaataacatcaatcaatatgaaaaggaaaaata 7822658  T
Q  196 aatcaagca--tgtggaaattaagcctgat 223  Q
    || ||||||  |||||||||||||||||||    
T  7822659 aaccaagcatgtgtggaaattaagcctgat 7822688  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 17830184 - 17830274
Alignment:
Q  15 gaattgtgataaaatatataattgtgatagagatgcacaaaataatcaaaacaacgtacacttggccaaaagttaaattttgtagagatgt 105  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  || ||||||||||  ||||| ||||||| ||||||    
T  17830184 gaattgtgataaaatatataattgtgatagagatgcacacaataatcaaaacaaaataaacttggccaatggttaatttttgtatagatgt 17830274  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 17830361 - 17830471
Alignment:
Q  96 gtagagatgtggaaagaaaagaagccttaattcaaacttaagcaactcaaatagattgtatcaaacagtaataacatcaatcaatatgaaaggaaaaata 195  Q
    |||||||| |||||||||||||  ||||||||||||||||||||||||||| | ||||||| |  ||||||||   || |||||||||||||||||||||    
T  17830361 gtagagatatggaaagaaaagagaccttaattcaaacttaagcaactcaaacatattgtattaggcagtaatattctcgatcaatatgaaaggaaaaata 17830460  T
Q  196 aatcaagcatg 206  Q
    || ||||||||    
T  17830461 aaccaagcatg 17830471  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 44126018 - 44126065
Alignment:
Q  12 aaggaattgtgataaaatatataattgtgatagagatgcacaaaataa 59  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  44126018 aaggaattgtgataaaatatataattgtgatagagatgcacacaataa 44126065  T

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Target: scaffold0351 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 16 - 63
Alignment:
Q  16 aattgtgataaaatatataattgtgatagagatgcacaaaataatcaa 63  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  16 aattgtgataaaatatataattgtgatagaggtgcacacaataatcaa 63  T

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Target: scaffold0351; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 5506 - 5553
Alignment:
Q  16 aattgtgataaaatatataattgtgatagagatgcacaaaataatcaa 63  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  5506 aattgtgataaaatatataattgtgatagaggtgcacacaataatcaa 5553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 13849 - 13896
Alignment:
Q  16 aattgtgataaaatatataattgtgatagagatgcacaaaataatcaa 63  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  13849 aattgtgataaaatatataattgtgatagaggtgcacacaataatcaa 13896  T

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Target: scaffold0002 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 114845 - 114798
Alignment:
Q  16 aattgtgataaaatatataattgtgatagagatgcacaaaataatcaa 63  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  114845 aattgtgataaaatatataattgtgatagaggtgcacacaataatcaa 114798  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 56339721 - 56339765
Alignment:
Q  21 tgataaaatatataattgtgatagagatgcacaaaataatcaaaa 65  Q
    ||||| |||||||||||||||||||||| |||| |||||||||||    
T  56339721 tgatagaatatataattgtgatagagatacacacaataatcaaaa 56339765  T

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