View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0627_low_42 (Length: 251)
Name: NF0627_low_42
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 5080446 - 5080213
Alignment:
| Q |
1 |
cctcaagcaacaacatggcatccctctttggtcaacttttcatttcaacattttaaccataagaactgggagaaaaatataacatgttcttaagctttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5080446 |
cctcaagcaacaacatggcatccctctttgatcaacttttcatttcaacattttaaccataagaactgggagaaaaatataacatgttgttaagctttaa |
5080347 |
T |
|
| Q |
101 |
gcgtaattatgttttcatttatctgaattttcaatcaaacaagcaggaaaaaatacttcagcttacagaaagattgaagtataatcattattctcttttc |
200 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5080346 |
gcgtaaatatgttttcatttatctgaaatttcaatcaaacaagcaggaaaaattacgtctgcttacagaaagattgaagtataatcattattctcttttc |
5080247 |
T |
|
| Q |
201 |
tgaatttcagctgatttattaaggatacacacag |
234 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| |
|
|
| T |
5080246 |
tgaattttatctgatttattaaggatacacacag |
5080213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 27335208 - 27335261
Alignment:
| Q |
139 |
acaagcaggaaaaaatacttcagcttacagaaagattgaagtataatcattatt |
192 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||||| ||| |||||||||| |
|
|
| T |
27335208 |
acaagcaggaaaaaatacttcaacttacaaaatgattgatgtaaaatcattatt |
27335261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 27395948 - 27396001
Alignment:
| Q |
139 |
acaagcaggaaaaaatacttcagcttacagaaagattgaagtataatcattatt |
192 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||||| ||| |||||||||| |
|
|
| T |
27395948 |
acaagcaggaaaaaatacttcaacttacaaaatgattgatgtaaaatcattatt |
27396001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3428 times since January 2019
Visitors: 4035