View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_52 (Length: 209)
Name: NF0627_low_52
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 14357386 - 14357207
Alignment:
| Q |
1 |
caccaccatcgccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcatttcttaacccaattgcacttcagttcataatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
14357386 |
caccaccatcgccatcagtagttggaacttcttcaactgggtgaattgaagcatggctcaccttcatttcttaacccaattgcacttcaattcataatca |
14357287 |
T |
|
| Q |
101 |
cacactacccaactttttcttcttcgccaaatctaatcaaaatccgtaaaataatttcaaaactcaattaactaatcaat |
180 |
Q |
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| T |
14357286 |
cacactacccaactttttcttcttcaccaaatctaatcaaaatccgtaaaataatttcaaaactcaattaattaatcaat |
14357207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 4 - 180
Target Start/End: Original strand, 29657613 - 29657789
Alignment:
| Q |
4 |
caccatcgccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcatttcttaacccaattgcacttcagttcataatcacac |
103 |
Q |
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||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
29657613 |
caccatcaccatcagtagttggaacttcttcaatttggtgaattgaagcatggctcacattcatttcttaacccaatttcacttcaattcataatcacac |
29657712 |
T |
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| Q |
104 |
actacccaactttttcttcttcgccaaatctaatcaaaatccgtaaaataatttcaaaactcaattaactaatcaat |
180 |
Q |
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| T |
29657713 |
atcacccaactttttcttcttcaccaaatctaatcaaaatccataaaataatttcaaaactcaattaactaatcaat |
29657789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 21731117 - 21730966
Alignment:
| Q |
12 |
ccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcatttcttaacccaattgcacttcagttcataatcacacactaccca |
111 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||| |
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| T |
21731117 |
ccatcagtagttggaacttcttcaactgggtgaattgaagcatggctcacgttcatttcttcacccaattacacttcaattcataatcacacaccaccca |
21731018 |
T |
|
| Q |
112 |
actttttctt---cttcgccaaatctaatcaaaatccgtaaaataatttcaa |
160 |
Q |
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|||||||||| |||| |||||||||||||||| || | |||||||||||| |
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| T |
21731017 |
actttttcttctacttcaccaaatctaatcaaaacccatcaaataatttcaa |
21730966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 5547328 - 5547496
Alignment:
| Q |
12 |
ccatcagtagttggaacttcttcaactgagtgaattgaagcatggctcacgttcatttcttaacccaattgcacttcagttcataatcacacactaccca |
111 |
Q |
| |
|
|||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| || | ||||| |
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| T |
5547328 |
ccatcaatagttcgaactttttcaactggatgaattgaagcatggctcacgttcatttcttcatccaattgcacttcaattcataatctcatgccaccca |
5547427 |
T |
|
| Q |
112 |
actttttcttcttcgccaaatctaatcaaaatccgtaaaataatttcaaaactcaattaactaatcaat |
180 |
Q |
| |
|
|||||||||||||| |||||||||||||| | || ||||||||||||||||||||||||| |||||||| |
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|
| T |
5547428 |
actttttcttcttcaccaaatctaatcaatacccataaaataatttcaaaactcaattaagtaatcaat |
5547496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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