View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_53 (Length: 202)
Name: NF0627_low_53
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_53 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 35048264 - 35048417
Alignment:
| Q |
49 |
tcacgcgcactccttttttattcttaatgattttgtatnnnnnnngcaactcaaatcactcccacatttacagcgccaaatgcaatttcaccgccactaa |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35048264 |
tcacgcgcactccttttttattcttaatgattttgtataaaaaaagcaactcaaatcactcccacatttacagcgccaaatgcaatttcaccgccactaa |
35048363 |
T |
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| Q |
149 |
ttgattgatctcaccaccaattctacagacctttctcgtttcgtcgccgttgtt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35048364 |
ttgattgatctcaccaccaattctacagacctttctcgtttcgtcgccgttgtt |
35048417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 15636533 - 15636425
Alignment:
| Q |
94 |
gcaactcaaatcactcccacatttacagcgccaaatgcaatttcaccgccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtc |
193 |
Q |
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|||||| ||||||||||||| |||||| |||||||| |||||| |||||||| ||||| ||||||||||||| ||||| ||| ||||| || ||||||| |
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| T |
15636533 |
gcaactgaaatcactcccacgtttacaccgccaaatacaatttaaccgccaccaattggttgatctcaccacaaattccacaagcctttgtcttttcgtc |
15636434 |
T |
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| Q |
194 |
gccgttgtt |
202 |
Q |
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||||||||| |
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| T |
15636433 |
gccgttgtt |
15636425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 49622064 - 49622172
Alignment:
| Q |
94 |
gcaactcaaatcactcccacatttacagcgccaaatgcaatttcaccgccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtc |
193 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49622064 |
gcaactcaaatcactcccacgtttacagcgccaaatgcaatttcaccgccactaattgattgatctcaccaccaattctacagacctttgtcgtttcgtc |
49622163 |
T |
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| Q |
194 |
gccgttgtt |
202 |
Q |
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||||||||| |
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| T |
49622164 |
gccgttgtt |
49622172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 20008388 - 20008287
Alignment:
| Q |
101 |
aaatcactcccacatttacagcgccaaatgcaatttcaccgccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtcgccgttg |
200 |
Q |
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|||||||||||| ||| |||||||||||||||||| || ||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||| |
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| T |
20008388 |
aaatcactcccatgtttgcagcgccaaatgcaatttaactgccactaattggttgatctcaccaccaagtctacaagcctttgtcgtttcgtcgccgttg |
20008289 |
T |
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| Q |
201 |
tt |
202 |
Q |
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|| |
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| T |
20008288 |
tt |
20008287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 53325875 - 53325767
Alignment:
| Q |
94 |
gcaactcaaatcactcccacatttacagcgccaaatgcaatttcaccgccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtc |
193 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| |
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| T |
53325875 |
gcaactgaaatcactcccacgtttacagcgccaaatgcaatttaaccgccactaattggttgatctcaccaccaattctacaagcctttgtcgtttcgtc |
53325776 |
T |
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| Q |
194 |
gccgttgtt |
202 |
Q |
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||| ||||| |
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| T |
53325775 |
gccattgtt |
53325767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 14121974 - 14122082
Alignment:
| Q |
94 |
gcaactcaaatcactcccacatttacagcgccaaatgcaatttcaccgccactaattgattgatctcaccaccaattctacagacctttctcgtttcgtc |
193 |
Q |
| |
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|||||| |||||||||||| ||| |||||||||||||||||| || ||||||||||| |||||||||||||||| |||||| ||||| |||||||||| |
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| T |
14121974 |
gcaactgaaatcactcccatgtttgcagcgccaaatgcaatttaactgccactaattggttgatctcaccaccaagtctacaagcctttgtcgtttcgtc |
14122073 |
T |
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| Q |
194 |
gccgttgtt |
202 |
Q |
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||||||||| |
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| T |
14122074 |
gccgttgtt |
14122082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 35056454 - 35056393
Alignment:
| Q |
114 |
atttacagcgccaaatgcaatttcaccgccactaattgattgatctcaccaccaattctaca |
175 |
Q |
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|||||||||||| |||||| ||| ||||||||||||| || |||||||||||||||||||| |
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| T |
35056454 |
atttacagcgccgaatgcactttagccgccactaattggttaatctcaccaccaattctaca |
35056393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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