View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_6 (Length: 487)
Name: NF0627_low_6
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 265 - 482
Target Start/End: Original strand, 2934237 - 2934456
Alignment:
| Q |
265 |
gagtgtaaatgaacaagagaaattgattccaaaaatatat--aaaatcgataacaaatatgcactattggttggtatatagttgaagaagatttctctaa |
362 |
Q |
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| T |
2934237 |
gagtgtaaatgaacaagagaaattgatacaaaaaaaatatgaaaaatcgataacaaatatgcaccattggttggtatatagttgaagaagatctctctaa |
2934336 |
T |
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| Q |
363 |
cgaacaaagctccaacactgaaaagtaatcctactatgatcctaaccgaatttgttattccattctaacctctcaaaccgtagtaataaatatttcaacc |
462 |
Q |
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| T |
2934337 |
cgaacaaagctccaacactgaaaaataatcctactatgatcctaaccgaatttgttattccattctaacctctcaaaccgtagtaataaatatttcaacc |
2934436 |
T |
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| Q |
463 |
aagcagtaattcatctcact |
482 |
Q |
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| T |
2934437 |
aagcagtaattcatttcact |
2934456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 2934008 - 2934201
Alignment:
| Q |
29 |
atcacaagtatatagttttcccaaaataaaatgaaaagtggggctggaccagaaaacatgcaagatgaaaaaatgg-nnnnnnnnctacgattttaccat |
127 |
Q |
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| T |
2934008 |
atcacaagtatatagttttcccaaaataaaatgaaaaatggggctggaccagaaaacatgcaagatgaaaaaatggtttttttttctacgattttaccat |
2934107 |
T |
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| Q |
128 |
attttctttcactttcaacacaataaaacaaatgaagagaaaaatatcatttgtttcccttccatttggaccaattcgatagaaaccaatgaagctgggt |
227 |
Q |
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| T |
2934108 |
attttctttcactttcaacacaat--------tcgatagaaaaatattatttgtttcccttccatttggaccaattcgatagaaaccaacgaagctgggt |
2934199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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