View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_7 (Length: 467)
Name: NF0627_low_7
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 3 - 439
Target Start/End: Original strand, 10588433 - 10588869
Alignment:
| Q |
3 |
catctccaacaatatcaaacaccttgaaagtcttcaaaagatcactttctaactcttcaatctcagcatcaccaccatcaccatttttgtgattcaatat |
102 |
Q |
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|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10588433 |
catctccatctaaatcaaacaccttgaaagtcttcaaaagatcactttctaactcttcaatctcagcatcaccaccatcaccatttttgtgattcaatat |
10588532 |
T |
|
| Q |
103 |
ggagtcataaaagcacaagaactcactcaagtttagactcttctttcccactagatattcaagctcctctatgctatacttgaaacctgttctcactaac |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10588533 |
ggagtcataaaagcacaagaactcactcaagtttagactcttctttcccactagatattcaagctcctctatgctatacttgaaacccgttctcactaac |
10588632 |
T |
|
| Q |
203 |
aattgattcagctcttcaagggttaaaattccatcactatttatgtctagtttctcaaaaatcagctccaattcattggtggttaggggacacatattgg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10588633 |
aattgattcagctcttcaagggttaaaattccatcactatttatgtctagtttctcaaaaatcagctccaattcattggtggttaggggacacatattgg |
10588732 |
T |
|
| Q |
303 |
caagattctccacagatgcacatgtataaatactcatgtgtaaggtgtgaattaattgcacataacatatgtagggacaacagaacacttgtatatccta |
402 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
10588733 |
caagattctccacagatgcacatgtataaatactcatgtgtaaggtgtgaattaattgcacataacatatgtagggaccacagaacacttgtatacccta |
10588832 |
T |
|
| Q |
403 |
ataacaataaagtctggaactttctagtgtatttgat |
439 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
10588833 |
ataacaataaagtctggaactttctagtgtatttgat |
10588869 |
T |
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