View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0627_low_8 (Length: 432)
Name: NF0627_low_8
Description: NF0627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0627_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Original strand, 49907354 - 49907746
Alignment:
| Q |
11 |
cacagagcatttttcttttacaattgatgcaagagaatatttatttttgtggttggagaatatgattgttttattacatataaatatttttaagaggcgg |
110 |
Q |
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| T |
49907354 |
cacagagcatttttcttttacaattgatggaagagaatatttatttttgcggttggagaatatgattgttttattacatataaatatttttaagaggcgg |
49907453 |
T |
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| Q |
111 |
attgttatatatctacttcagtttcttaaatataccctgtaacagaattcatctttctggttcactgattcagtatcactgcagttcagttttcctttac |
210 |
Q |
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| T |
49907454 |
attgttatatatctacttcagtttcttaaatataccctgtaacagaattcatctttctggttcactaattcagaatcattgcagttcagttttcctttac |
49907553 |
T |
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| Q |
211 |
atattttgggtcctatccatcagtttccttaaatttaattcatgataggacattatgatctggtttgactcatgtagccgacccgacttagttgaaaaag |
310 |
Q |
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| T |
49907554 |
atattttgggtcctatccatcagtttccttaaacttaattcatgataggacattatgatctggtttgactcatgtagccgactcgacttagttgaaaaag |
49907653 |
T |
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| Q |
311 |
gctttatctgttgtatctaagtaaggttttttatatagatatgtatgaattattacaaatttatagcattgagatgaacaaatgagtggaaat |
403 |
Q |
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| T |
49907654 |
gctttatctgttgtatctaagtaaggttttttatatagatatgtatgaattattacaaatttatagcattgagatgaacaaatgagttgaaat |
49907746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 49561426 - 49561288
Alignment:
| Q |
139 |
aatataccctgtaacagaattcatctttctggttcactgattc-agtatcactgcagttcagttttcctttacatattttgggtcctatccatcagtttc |
237 |
Q |
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||||||||||| |||| ||||||||||||| ||||| ||||| ||||||| |||| |||| ||||||||| |||||||||| ||||||| | | || |
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| T |
49561426 |
aatataccctgcaacaaaattcatctttctagttcagtgattttagtatcaatgcaattcacttttccttttcatattttggttcctatc----actatc |
49561331 |
T |
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| Q |
238 |
cttaaatttaattcatgataggacattatgatctggtttgact |
280 |
Q |
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| T |
49561330 |
cttagactttattcatgataggacattatgatctggtttgact |
49561288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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