View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0628_high_1 (Length: 352)
Name: NF0628_high_1
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0628_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 29332568 - 29332884
Alignment:
| Q |
7 |
tccaagaatatacatgcatgttaatttgcactnnnnnnnntacaaagcaaaaatgatgcaatatatttataaaaaccttggaaacttgattgagaacttc |
106 |
Q |
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| T |
29332568 |
tccaagaatatacatgcatgttaatttgcactaaaaaaaatacaaagcaaaaatgatgcaatatatttataaaaaccttggaaacttgattgagaacttc |
29332667 |
T |
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| Q |
107 |
tgattgattagaggaaccaaaagcattgatgactttcccaagaagaagtgtcatgagaggacttgcaaatccattagccatggcagaaatagtgccaatg |
206 |
Q |
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| T |
29332668 |
tgattgattagaggaaccaaaagcattgatgactttcccaagaagaagtgtcatgagaggacttgcaaatccattagccatggcagaaatagtgccaatg |
29332767 |
T |
|
| Q |
207 |
atcatcaacgttacgtcaagactatcagcaaaactaaagagcttgtagaatggaactatttggttggctttgttaacattttgttgggtagatgatgaag |
306 |
Q |
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| T |
29332768 |
atcatcaaagttacgtcaagacgatcagcaaaactaaagagcttgtagaatggaactatttggttggctttgttaacatgttgttgggtagatgatgaag |
29332867 |
T |
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| Q |
307 |
aattttcatgtacctca |
323 |
Q |
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| T |
29332868 |
aattttcatgtacctca |
29332884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 81 - 281
Target Start/End: Original strand, 5835170 - 5835370
Alignment:
| Q |
81 |
accttggaaacttgattgagaacttctgattgattagaggaaccaaaagcattgatgactttcccaagaagaagtgtcatgagaggacttgcaaatccat |
180 |
Q |
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| T |
5835170 |
accttagaaacttgtttgatagcgtctgctggattagaggaaccaaatgcattgatgacattcccaagaaagagagtcatgagagggcttgccaatccat |
5835269 |
T |
|
| Q |
181 |
tagccatggcagaaatagtgccaatgatcatcaacgttacgtcaagactatcagcaaaactaaagagcttgtagaatggaactatttggttggctttgtt |
280 |
Q |
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| T |
5835270 |
tagccacagcagagatagtgccaatgatcatcaacgttacatcaagatgatcagcaaaattgaaaagcatgtagaatggaactttttgttttgttttgtt |
5835369 |
T |
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| Q |
281 |
a |
281 |
Q |
| |
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| |
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| T |
5835370 |
a |
5835370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 5763434 - 5763330
Alignment:
| Q |
177 |
ccattagccatggcagaaatagtgccaatgatcatcaacgttacgtcaagactatcagcaaaactaaagagcttgtagaatggaactatttggttggctt |
276 |
Q |
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|||||||| | |||||| || ||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||| ||||| |||| | |||||||||| |
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| T |
5763434 |
ccattagcaacggcagagatggtgccaatgatcatcaatgttacatcaagactatcagcaaaagtaaagagtttgtggaatgaaactttctggttggctt |
5763335 |
T |
|
| Q |
277 |
tgtta |
281 |
Q |
| |
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||||| |
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|
| T |
5763334 |
tgtta |
5763330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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