View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0628_high_5 (Length: 267)

Name: NF0628_high_5
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0628_high_5
NF0628_high_5
[»] scaffold0177 (1 HSPs)
scaffold0177 (25-243)||(18521-18739)
[»] chr4 (2 HSPs)
chr4 (25-121)||(15473391-15473487)
chr4 (191-241)||(15473355-15473405)
[»] chr8 (2 HSPs)
chr8 (25-174)||(21290192-21290326)
chr8 (167-241)||(21290277-21290351)
[»] scaffold1078 (3 HSPs)
scaffold1078 (167-241)||(2532-2606)
scaffold1078 (25-117)||(2599-2691)
scaffold1078 (128-174)||(2557-2603)
[»] scaffold0422 (1 HSPs)
scaffold0422 (25-102)||(13559-13636)
[»] chr1 (5 HSPs)
chr1 (25-102)||(19168514-19168591)
chr1 (153-232)||(19168441-19168520)
chr1 (111-174)||(19168457-19168520)
chr1 (25-139)||(20881952-20882066)
chr1 (25-102)||(23068784-23068861)
[»] scaffold0080 (1 HSPs)
scaffold0080 (25-102)||(1195-1272)
[»] chr3 (2 HSPs)
chr3 (28-102)||(17008078-17008152)
chr3 (28-102)||(17018884-17018958)
[»] scaffold0752 (1 HSPs)
scaffold0752 (25-62)||(3844-3881)
[»] chr6 (3 HSPs)
chr6 (25-58)||(11237488-11237521)
chr6 (25-62)||(19285414-19285451)
chr6 (25-139)||(18544948-18545062)
[»] scaffold0414 (1 HSPs)
scaffold0414 (25-59)||(5372-5406)
[»] scaffold0007 (1 HSPs)
scaffold0007 (25-139)||(57409-57523)
[»] chr5 (1 HSPs)
chr5 (28-102)||(13525075-13525149)
[»] scaffold0537 (1 HSPs)
scaffold0537 (25-54)||(2904-2933)


Alignment Details
Target: scaffold0177 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 25 - 243
Target Start/End: Complemental strand, 18739 - 18521
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcagaaatagtgtgttcaggaacaga 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18739 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcataagcaatttgttcagaaatagtgtgttcaggaacaga 18640  T
Q  125 ttattcagaggggtttcgttcagaagtgtgttcaggaacgacttgttcagaggggttttgttcagaagtgtgttcaggaacgacttgatcaggaacagtt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18639 ttattcagaggggtttcgttcagaagtgtgttcaggaacgacttgttcagaggggttttgttcagaagtgtgttcaggaacgacttgatcaggaacagtt 18540  T
Q  225 tcttggttcaaggttgatg 243  Q
    |||||||||||||||||||    
T  18539 tcttggttcaaggttgatg 18521  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 15473487 - 15473391
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcagaaatagtgtgttcaggaac 121  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  15473487 cagagacatctgatgtgatcataggttctgattcagataaggtttctgaggtgggttgctcagaagcaatttgttcaggaatagtgtgttcaggaac 15473391  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 15473405 - 15473355
Alignment:
Q  191 agtgtgttcaggaacgacttgatcaggaacagtttcttggttcaaggttga 241  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||||||||||    
T  15473405 agtgtgttcaggaacgacttgttcaagaacagcttcttggttcaaggttga 15473355  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 21290192 - 21290326
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcagaaatagtgtgttcaggaacaga 124  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| || |||||||| ||||||||||||||               |||||| |||||||    
T  21290192 cagagacatctgatgtgatcataggttatgattcagataaggttcctaaggtgggttgctcagaagcaatt---------------tgttcaagaacaga 21290276  T
Q  125 ttattcagaggggtttcgttcagaagtgtgttcaggaacgacttgttcag 174  Q
    || ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  21290277 ttgttcagaggggttttgttcagaagtgtgttcaggaacaacttgttcag 21290326  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 21290277 - 21290351
Alignment:
Q  167 ttgttcagaggggttttgttcagaagtgtgttcaggaacgacttgatcaggaacagtttcttggttcaaggttga 241  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  21290277 ttgttcagaggggttttgttcagaagtgtgttcaggaacaacttgttcaggaacagcttcttggttcaaggttga 21290351  T

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Target: scaffold1078 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: scaffold1078
Description:

Target: scaffold1078; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 2606 - 2532
Alignment:
Q  167 ttgttcagaggggttttgttcagaagtgtgttcaggaacgacttgatcaggaacagtttcttggttcaaggttga 241  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| ||||||||    
T  2606 ttgttcagaggggttttgttcagaagtgagttcaggaacaacttgttcaggaacagtttcttggttaaaggttga 2532  T

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Target: scaffold1078; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 2691 - 2599
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcagaaatagtgtgttcag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  ||| ||| |||||||| || ||||||||| |||||  |||||||    
T  2691 cagagacatctgatgagatcataggttctgattcagataaggtttttagggttggttgctcagaaacagtttgttcaggaatagattgttcag 2599  T

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Target: scaffold1078; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 2603 - 2557
Alignment:
Q  128 ttcagaggggtttcgttcagaagtgtgttcaggaacgacttgttcag 174  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  2603 ttcagaggggttttgttcagaagtgagttcaggaacaacttgttcag 2557  T

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Target: scaffold0422 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 13559 - 13636
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcag 102  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||| || ||||||||||||    
T  13559 cagagacatctgatgagatcataggttctgattcagatagggtttctaaggttggttgctcataaacaatttgttcag 13636  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 19168591 - 19168514
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcag 102  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  ||| ||| |||||||| ||||||||||||    
T  19168591 cagagacatctgatgagatcataggttctgattgagataaggtttctagggttggttgctcagaaacaatttgttcag 19168514  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 19168520 - 19168441
Alignment:
Q  153 tgttcaggaacgacttgttcagaggggttttgttcagaagtgtgttcaggaacgacttgatcaggaacagtttcttggtt 232  Q
    |||||||||||   |||||||||||||||||||||||||| |  |||| |||| ||||| ||||||||||||| ||||||    
T  19168520 tgttcaggaacagattgttcagaggggttttgttcagaagagatttcaagaacaacttgttcaggaacagtttgttggtt 19168441  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 19168520 - 19168457
Alignment:
Q  111 tgttcaggaacagattattcagaggggtttcgttcagaagtgtgttcaggaacgacttgttcag 174  Q
    |||||||||||||||| ||||||||||||| ||||||||| |  |||| |||| ||||||||||    
T  19168520 tgttcaggaacagattgttcagaggggttttgttcagaagagatttcaagaacaacttgttcag 19168457  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 20882066 - 20881952
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcagaaatagtgtgttcaggaacaga 124  Q
    |||||||||||||||||||||||||||||| ||| |||  |||||   |||| ||| |||||||| || ||||||||| || ||   ||||| ||||| |    
T  20882066 cagagacatctgatgagatcataggttctggttctgattgggtttgaaaggtaggttgctcagaaacagtttgttcaggaacagatagttcaagaacaaa 20881967  T
Q  125 ttattcagaggggtt 139  Q
    || ||||||| ||||    
T  20881966 ttgttcagagaggtt 20881952  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 23068784 - 23068861
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcag 102  Q
    |||||||||||||||||||||| ||||||| |||||||   ||||||  ||| ||| |||||||| || |||||||||    
T  23068784 cagagacatctgatgagatcattggttctggttcagattgagtttctagggttggttgctcagaaacagtttgttcag 23068861  T

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Target: scaffold0080 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 1195 - 1272
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcag 102  Q
    |||||||||||||||||||||||||||||| ||| |||  ||||||  | || ||| |||||||| ||||||||||||    
T  1195 cagagacatctgatgagatcataggttctggttctgattgggtttcaaatgtaggttgctcagaaacaatttgttcag 1272  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 17008078 - 17008152
Alignment:
Q  28 agacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcag 102  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||  ||| ||| |||||||| || | |||||||    
T  17008078 agacatctgatgagatcattggttctggttcagataaagtttctagggttggttgctcagaaccagtgtgttcag 17008152  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 17018884 - 17018958
Alignment:
Q  28 agacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcag 102  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||  ||| ||| |||||||| || | |||||||    
T  17018884 agacatctgatgagatcattggttctggttcagataaagtttctagggttggttgctcagaaccagtgtgttcag 17018958  T

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Target: scaffold0752 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0752
Description:

Target: scaffold0752; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 3844 - 3881
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagat 62  Q
    |||||||||||||||||||||||||||||| |||||||    
T  3844 cagagacatctgatgagatcataggttctggttcagat 3881  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 11237488 - 11237521
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattc 58  Q
    ||||||||||||||||||||||||||||||||||    
T  11237488 cagagacatctgatgagatcataggttctgattc 11237521  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 19285451 - 19285414
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagat 62  Q
    |||||||||||||||||||||||||||||| |||||||    
T  19285451 cagagacatctgatgagatcataggttctggttcagat 19285414  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 18544948 - 18545062
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcagaaatagtgtgttcaggaacaga 124  Q
    |||||||||||||||||||||||||||||  ||  |||   |||||   ||| ||| |||||||| || |||||||||||| ||   ||||||||||| |    
T  18544948 cagagacatctgatgagatcataggttctagttatgattgagtttccagggtaggttgctcagaaacagtttgttcagaaacagatagttcaggaacaaa 18545047  T
Q  125 ttattcagaggggtt 139  Q
    || ||||||| ||||    
T  18545048 ttgttcagagaggtt 18545062  T

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Target: scaffold0414 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 5406 - 5372
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattca 59  Q
    ||||||||||||||| |||||||||||||||||||    
T  5406 cagagacatctgatgtgatcataggttctgattca 5372  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 57523 - 57409
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcagaaatagtgtgttcaggaacaga 124  Q
    |||||||||||||||||||||||||||||| ||| |||  ||||||   ||| ||| |||||||| || ||| ||||  || ||   ||||||||||| |    
T  57523 cagagacatctgatgagatcataggttctggttctgattgggtttcaagggtaggttgctcagaaacagttttttcaagaacagatagttcaggaacaaa 57424  T
Q  125 ttattcagaggggtt 139  Q
    || ||||||| ||||    
T  57423 ttgttcagagaggtt 57409  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 13525075 - 13525149
Alignment:
Q  28 agacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcagaagcaatttgttcag 102  Q
    ||||||||||||||||||||||||||| ||| |||  ||||||   ||| ||| |||||||| || |||||||||    
T  13525075 agacatctgatgagatcataggttctggttctgattgggtttcaagggtaggttgctcagaaacagtttgttcag 13525149  T

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Target: scaffold0537 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0537
Description:

Target: scaffold0537; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 2933 - 2904
Alignment:
Q  25 cagagacatctgatgagatcataggttctg 54  Q
    ||||||||||||||||||||||||||||||    
T  2933 cagagacatctgatgagatcataggttctg 2904  T

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