View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0628_low_19 (Length: 326)
Name: NF0628_low_19
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0628_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 44631570 - 44631282
Alignment:
| Q |
10 |
atgaagatttggttgaattaaagtttgatacagtaacaaa-cctttgtcttggtctcacattttatatccaattgttgtagccgaagggagagatgaccg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631570 |
atgaagatttggttgaattaaagtttgagacagtaacaaaacctttgtcttggtctcacattttatatccaattgttgtagccgaagggagagatgaccg |
44631471 |
T |
|
| Q |
109 |
gcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccttctctcatagccaccgtagactgat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631470 |
gcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccttctctcatagccaccgtagactgat |
44631371 |
T |
|
| Q |
209 |
caacttgcacgcaacacaaaagattccccatttgcttttaactgcaatgtttgaaatcacatcagcacatcatcaactcaacaagatac |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631370 |
caacttgcacgcaacacaaaagattccccatttgcttttaactgcaatgtttgaaatcacatcagcacatcatcaactcaacaagatac |
44631282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 44637270 - 44637547
Alignment:
| Q |
11 |
tgaagatttggttgaattaaagtttgatacagtaacaaac----ctttgtcttggtctcacattttatatccaattgttgtagccgaagggagagatgac |
106 |
Q |
| |
|
||||||||| ||| |||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
44637270 |
tgaagatttcgttaaattgaagttttagacagtaacaaacgaacctttgtcttggtctcacattttatatccaattgctgtagccgaagagagagatgac |
44637369 |
T |
|
| Q |
107 |
cggcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccttctctcatagccaccgtagactg |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| || |
|
|
| T |
44637370 |
cagcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccctctttcatagccactgtagattg |
44637469 |
T |
|
| Q |
207 |
atcaacttgcacgcaacacaaaagattccccatttgcttttaactgcaatgtttgaaatcacatcagcacatcatcaa |
284 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
44637470 |
atcaacttgcacacaacacaaaagattccccattttcttttaactgcaacatttcaaaatacatcagcacatcatcaa |
44637547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 44682071 - 44681797
Alignment:
| Q |
10 |
atgaagatttggttgaattaaagtttgatacagtaacaaacctttgtcttggtctcacattttatatccaattgttgtagccgaagggagagatgaccgg |
109 |
Q |
| |
|
|||||||||||||| |||| | |||||| ||||||||||||||||||||| |||||||| || |||||||||||||||| |||||| ||||||||||| | |
|
|
| T |
44682071 |
atgaagatttggtttaattgatgtttgagacagtaacaaacctttgtctttgtctcacacttgatatccaattgttgtacccgaagagagagatgaccag |
44681972 |
T |
|
| Q |
110 |
caattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccttctctcatagccaccgtagactgatc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||| |
|
|
| T |
44681971 |
caattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaaaccttctttcatagccacttgagattgatc |
44681872 |
T |
|
| Q |
210 |
aacttgcacgcaacacaaaagattccccatttgcttttaactgcaatgtttgaaatcacatcagcacatcatcaa |
284 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||||| ||||||||| |||||| | |||||||||||||||| |
|
|
| T |
44681871 |
aacttgcacacaacacacaagattccccattttcttttcactgcaatgcttgaaaatatatcagcacatcatcaa |
44681797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 44653049 - 44652783
Alignment:
| Q |
18 |
ttggttgaattaaagtttgatacagtaacaaacctttgtcttggtctcacattttatatccaattgttgtagccgaagggagagatgaccggcaattcgt |
117 |
Q |
| |
|
|||||| |||| | |||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||| | |
|
|
| T |
44653049 |
ttggtttaattgatgtttgagaccgtaacgaacctttgtcttggtctcacatttgatatccaattgttgtacccgaagagagagatgaccagcaattctt |
44652950 |
T |
|
| Q |
118 |
tttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccttctctcatagccaccgtagactgatcaacttgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
44652949 |
tttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaaaccttctttcatagccacttgagattgatcaacttgca |
44652850 |
T |
|
| Q |
218 |
cgcaacacaaaagattccccatttgcttttaactgcaatgtttgaaatcacatcagcacatcatcaa |
284 |
Q |
| |
|
| ||||||| |||||||||||||| ||||| ||||||||| || ||| | |||||||||||||||| |
|
|
| T |
44652849 |
cacaacacacaagattccccattttcttttcactgcaatgcttcaaaatatatcagcacatcatcaa |
44652783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 44691749 - 44691502
Alignment:
| Q |
10 |
atgaagatttggttgaattaaagtttgatacagtaacaaacc----tttgtcttggtctcacattttatatccaattgttgtagccgaagggagagatga |
105 |
Q |
| |
|
||||||||||||| |||| |||||| | | ||||||||||| |||||||||||||||||||| |||||||||||||| | |||||| ||||||||| |
|
|
| T |
44691749 |
atgaagatttggtataattgaagttttagaaagtaacaaaccagcctttgtcttggtctcacatttgatatccaattgttgaacccgaagagagagatga |
44691650 |
T |
|
| Q |
106 |
ccggcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccttctctcatagccaccgtagact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| |||||||||||| |||||||||| ||| | |
|
|
| T |
44691649 |
ccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggatgaagcaccttttcaaatttcccaaaaccttctttcatagccacttgagatt |
44691550 |
T |
|
| Q |
206 |
gatcaacttgcacgcaacacaaaagattccccatttgcttttaactgc |
253 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| ||||| ||||| |
|
|
| T |
44691549 |
gatcaacttgcacgcaacacacaatattccccattttcttttcactgc |
44691502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3207 times since January 2019
Visitors: 4030