View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0628_low_20 (Length: 315)
Name: NF0628_low_20
Description: NF0628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0628_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 3702651 - 3702935
Alignment:
| Q |
7 |
gtgagatgaaaggcgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaa |
106 |
Q |
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| T |
3702651 |
gtgagatgaaaggtgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaa |
3702750 |
T |
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| Q |
107 |
ggctagagatgctattgctcataatcttttgcgtcatggtttagcaggcacnnnnnnnctttaaacttataagattaagaactttgtgttatttgttgta |
206 |
Q |
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| T |
3702751 |
ggctagagatgctattgctcataatcttttgcatcatggtttagcaggcacttcttttctttaaacttataagattaagaactttgtgttatttgttgta |
3702850 |
T |
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| Q |
207 |
ttttgatcattgttatatgcatctctgagaacatgattttattttttgctgtttg----tttatttacataatgttgaagtggct |
287 |
Q |
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| T |
3702851 |
ttttgatcattgttatatgcatctctgagaacatgattttattttttgctgtttgtttatttatttacataatgttgatgtggct |
3702935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 3698963 - 3699231
Alignment:
| Q |
7 |
gtgagatgaaaggcgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaa |
106 |
Q |
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| T |
3698963 |
gtgagatgaaaggtgagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctgaagttagtttgagatcagttaattcattgaa |
3699062 |
T |
|
| Q |
107 |
ggctagagatgctattgctcataatcttttgcgtcatggtttagcaggcacnnnnnnnctttaaacttataagattaagaactttgtgttatttgttgta |
206 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
3699063 |
ggctagagatgctattgctcataatcttttgcatcatggtttagcaggcacttcttttctttaaactcataagattaagaactttgtgtaatttgttgta |
3699162 |
T |
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| Q |
207 |
ttttgatcattgttatatgcatctctgagaacatgattttattttttgctgtttgtttatttacataatgttg |
279 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
3699163 |
ttttgatcattgttttatgcatctctgagaacatgattttcttttttgc----tgtttatttacataatgttg |
3699231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 39718869 - 39718924
Alignment:
| Q |
21 |
gagaaaatggatcctgaacttatggttgatattgttgatgatgaaatggttcctga |
76 |
Q |
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|||||||||||||||||||||| | ||||| || | |||||||||||| ||||||| |
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| T |
39718869 |
gagaaaatggatcctgaacttaagattgatgttttggatgatgaaatgcttcctga |
39718924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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